Replace pipes with tmp file

phac-nml · Jan 27, 2025 · 04f993c · 04f993c
1 parent bc8d4d2
commit 04f993c
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/modules/local/input_assure/main.nf b/modules/local/input_assure/main.nf
@@ -17,6 +17,7 @@ process INPUT_ASSURE {
     script:
 
     """
+    set -euo pipefail
     input_assure.py \\
         --input ${mlst} \\
         --sample_id ${meta.id} \\