TogoVar

TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them.

Docker

See togovar-docker for details.

Prerequisites

• ruby 2.7
• node.js v12.x (LTS)
  • yarn

Configuration

Development

Dotenv for development

# Frontend URL
TOGOVAR_FRONTEND_URL=https://togovar-stg.biosciencedbc.jp
# TogoStanza URL instead of relative URL `/stanza`
TOGOVAR_FRONTEND_STANZA_URL=https://togovar-stg.biosciencedbc.jp/stanza

# (Optional) if this is set, it will be passed to all stanzas as `ep`
TOGOVAR_STANZA_SPARQL_URL=https://togovar-stg.biosciencedbc.jp/sparql
# (Optional) if this is set, it will be passed to all stanzas as `sparqlist`
TOGOVAR_STANZA_SPARQLIST_URL=https://togovar-stg.biosciencedbc.jp/sparqlist
# (Optional) if this is set, it will be passed to stanzas that require `search` parameter
TOGOVAR_STANZA_SEARCH_API_URL=https://togovar-stg.biosciencedbc.jp/search
# (Optional) if this is set, it will be passed to stanzas that require `jbrowse` parameter
TOGOVAR_STANZA_JBROWSE_URL=https://togovar-stg.biosciencedbc.jp/jbrowse

Backend

1. First install dependencies:

   $ bundle install

2. Start development server on localhost:3000

   $ rails server

Frontend

1. First install dependencies:

   $ yarn install

2. Start development server on localhost:8000

   $ yarn start

Other commands

• Static code analysis for js and css

  $ yarn list

• Start production server

  $ start:production

• Build distribution files

  $ yarn build