adjust target line

parklab · Sep 8, 2020 · baa3c9f · baa3c9f
1 parent 47a65c1
commit baa3c9f
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Showing 24 changed files with 12 additions and 8 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,4 +1,5 @@
 *.pyc
+src/bamsnap/__pycache__/
 __pycache__/
 .DS_Store
 .eggs/

diff --git a/docs/version_history.rst b/docs/version_history.rst
@@ -3,6 +3,9 @@ Version History
 
 v0.2.x release series
 ---------------------
+0.2.11 (2020.09.08):
+	- adjust target line
+
 0.2.10 (2020.09.08):
 	- debug ValueError when MD tag of read is missing (`issue #5<https://github.com/parklab/bamsnap/issues/5>`_)
 

diff --git a/pack.sh b/pack.sh
@@ -2,5 +2,5 @@ pip uninstall -y bamsnap
 rm -rf build
 rm -rf ./dist/*
 python3 setup.py sdist bdist_wheel
-pip install ./dist/bamsnap-0.2.10-py3-none-any.whl
+pip install ./dist/bamsnap-0.2.11-py3-none-any.whl
 # twine upload dist/*
diff --git a/setup.py b/setup.py
@@ -20,7 +20,7 @@
 }
 
 setup(name='bamsnap',
-      version='0.2.10',
+      version='0.2.11',
       url='https://github.com/danielmsk/bamsnap',
       license='MIT',
       author='Daniel Minseok Kwon',

diff --git a/src/bamsnap.egg-info/PKG-INFO b/src/bamsnap.egg-info/PKG-INFO
@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bamsnap
-Version: 0.2.10
+Version: 0.2.11
 Summary: A converter from .bam to .png for specific genomic region.
 Home-page: https://github.com/danielmsk/bamsnap
 Author: Daniel Minseok Kwon

diff --git a/src/bamsnap/__pycache__/bamsnap.cpython-37.pyc b/src/bamsnap/__pycache__/bamsnap.cpython-37.pyc
diff --git a/src/bamsnap/__pycache__/drawread.cpython-37.pyc b/src/bamsnap/__pycache__/drawread.cpython-37.pyc
diff --git a/src/bamsnap/__pycache__/drawreadset.cpython-37.pyc b/src/bamsnap/__pycache__/drawreadset.cpython-37.pyc
diff --git a/src/bamsnap/bamsnap.py b/src/bamsnap/bamsnap.py
@@ -384,8 +384,8 @@ def drawplot_bamlist(self, pos1, image_w, bamlist, xscale, refseq):
 
         if not self.opt['no_target_line']:
             drawA = ImageDraw.Draw(ia)
-            x1 = xscale.xmap[pos1['t_spos']]['spos'] - 1
-            x2 = xscale.xmap[pos1['t_epos']]['epos'] + 1
+            x1 = xscale.xmap[pos1['t_spos']]['spos']
+            x2 = xscale.xmap[pos1['t_epos']]['spos']
             for h1 in range(0, ia.height, 7):
                 drawA.line([(x1, h1), (x1, h1+2)], fill=COLOR['CENTER_LINE'], width=1)
                 drawA.line([(x2, h1), (x2, h1+2)], fill=COLOR['CENTER_LINE'], width=1)

diff --git a/src/bamsnap/data/conf.json b/src/bamsnap/data/conf.json
@@ -1,7 +1,7 @@
 {
     "TITLE":"BAMSNAP",
-    "VERSION":"0.2.10",
-    "VERSION_DATE":"2020-09-07",
+    "VERSION":"0.2.11",
+    "VERSION_DATE":"2020-09-08",
     "PROG":"bamsnap",
     "options":[
         {"param":"bam", "default":[], "nargs":"*", "action": null, "choices":null, "type":null, "help":"bam file(s)"},

diff --git a/tests/out/NATRIO_chr10_117542948.png b/tests/out/NATRIO_chr10_117542948.png
diff --git a/tests/out/NATRIO_chr10_117542948_1.png b/tests/out/NATRIO_chr10_117542948_1.png
diff --git a/tests/out/NATRIO_chr10_117542948_2.png b/tests/out/NATRIO_chr10_117542948_2.png
diff --git a/tests/out/NATRIO_chr10_117542948_baseplot_ex1.png b/tests/out/NATRIO_chr10_117542948_baseplot_ex1.png
diff --git a/tests/out/NATRIO_chr10_117542948_baseplot_ex2.png b/tests/out/NATRIO_chr10_117542948_baseplot_ex2.png
diff --git a/tests/out/NATRIO_chr10_117542948_baseplot_ex3.png b/tests/out/NATRIO_chr10_117542948_baseplot_ex3.png
diff --git a/tests/out/NATRIO_chr9_114786933.png b/tests/out/NATRIO_chr9_114786933.png
diff --git a/tests/out/NATRIO_test_3/chr14:36516859.png b/tests/out/NATRIO_test_3/chr14:36516859.png
diff --git a/tests/out/NATRIO_test_3/chr1:45803673.png b/tests/out/NATRIO_test_3/chr1:45803673.png
diff --git a/tests/out/NATRIO_test_3/chr5:197095.png b/tests/out/NATRIO_test_3/chr5:197095.png
diff --git a/tests/out/test_DEL_1.png b/tests/out/test_DEL_1.png
diff --git a/tests/out/test_INV_1.png b/tests/out/test_INV_1.png
diff --git a/tests/out/test_noMDtag_1.png b/tests/out/test_noMDtag_1.png
diff --git a/tests/test_run.py b/tests/test_run.py
@@ -276,7 +276,7 @@ def test_run():
         # print(cmd)
         # print(shlex.quote(sys.argv))
         bamsnap.cli()
-
+        # break
 
 
 if __name__ == "__main__":