v0.2.6

docs/_build/html/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 76a70ecb502aa0a3c82b720bc9ff188e
+config: 8983ffb1223b379dd2464b3095aefe9a
 tags: 645f666f9bcd5a90fca523b33c5a78b7

docs/_build/html/_sources/index.rst.txt

@@ -6,6 +6,18 @@
 BamSnap
 =======
 
+.. image:: https://img.shields.io/pypi/v/bamsnap.svg
+   :target: https://pypi.org/project/bamsnap/
+   :alt: Latest PyPI version
+
+.. image:: https://img.shields.io/pypi/dm/bamsnap.svg
+   :target: https://pypi.org/project/bamsnap/
+   :alt: Number of PyPI downloads
+
+.. image:: https://readthedocs.org/projects/bamsnap/badge/?version=latest
+   :target: https://bamsnap.readthedocs.io/en/latest/
+   :alt: Documentation of BamSnap
+
 **BamSnap** is a high-performance visualization tool for aligned BAM file. **BamSnap** is a command line program written in python. All commands involve typing ``bamsnap`` at the command prompt (e.g. DOS window or Unix termninal) followed by a number of options to specify the data files / parameters to be used. 
 
 .. image:: ../tests/out/NATRIO_chr10_117542948.png
@@ -33,22 +45,13 @@ You can find more examples and commands in `gallary <gallary.html>`_. Use ``-h``
 BamSnap is open-source and can be found on `github <https://github.com/parklab/bamsnap>`_.
 
 
-.. image:: https://img.shields.io/pypi/v/bamsnap.svg
-   :target: https://pypi.org/project/bamsnap/
-   :alt: Latest PyPI version
 
-.. image:: https://img.shields.io/pypi/dm/bamsnap.svg
-   :target: https://pypi.org/project/bamsnap/
-   :alt: Number of PyPI downloads
-
-.. image:: https://readthedocs.org/projects/bamsnap/badge/?version=latest
-   :target: https://bamsnap.readthedocs.io/en/latest/
-   :alt: Documentation of BamSnap
 
 Contents
 --------
 
 .. toctree::
+   :numbered:
    :maxdepth: 4
 
    installation.rst

docs/_build/html/genindex.html

@@ -45,7 +45,7 @@
 
     <nav data-toggle="wy-nav-shift" class="wy-nav-side">
       <div class="wy-side-scroll">
-        <div class="wy-side-nav-search" >
+        <div class="wy-side-nav-search"  style="background: black" >
 
 
 
@@ -81,19 +81,19 @@
 
 
               <ul>
-<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gallary.html">Gallary</a></li>
-<li class="toctree-l1"><a class="reference internal" href="options.html">Optional arguments</a></li>
-<li class="toctree-l1"><a class="reference internal" href="input.html">Input files</a></li>
-<li class="toctree-l1"><a class="reference internal" href="output.html">Output files</a></li>
-<li class="toctree-l1"><a class="reference internal" href="plot.html">Plot options</a></li>
-<li class="toctree-l1"><a class="reference internal" href="read_plot.html">Read alignment track (<code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">read</span></code>)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="coverage_plot.html">Coverage track (<code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">coverage</span></code>)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="base_plot.html">Base track (<code class="docutils literal notranslate"><span class="pre">-draw</span> <span class="pre">base</span></code>, <code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">base</span></code>)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="gene_plot.html">Gene track (<code class="docutils literal notranslate"><span class="pre">-draw</span> <span class="pre">gene</span></code>)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="coordinates_plot.html">Coordinates track (<code class="docutils literal notranslate"><span class="pre">-draw</span> <span class="pre">coordinates</span></code>)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="heatmap.html">Heatmap track (<code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">heatmap</span></code>)</a></li>
-<li class="toctree-l1"><a class="reference internal" href="version_history.html">Version History</a></li>
+<li class="toctree-l1"><a class="reference internal" href="installation.html">1. Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gallary.html">2. Gallary</a></li>
+<li class="toctree-l1"><a class="reference internal" href="options.html">3. Optional arguments</a></li>
+<li class="toctree-l1"><a class="reference internal" href="input.html">4. Input files</a></li>
+<li class="toctree-l1"><a class="reference internal" href="output.html">5. Output files</a></li>
+<li class="toctree-l1"><a class="reference internal" href="plot.html">6. Plot options</a></li>
+<li class="toctree-l1"><a class="reference internal" href="read_plot.html">7. Read alignment track (<code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">read</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="coverage_plot.html">8. Coverage track (<code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">coverage</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="base_plot.html">9. Base track (<code class="docutils literal notranslate"><span class="pre">-draw</span> <span class="pre">base</span></code>, <code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">base</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="gene_plot.html">10. Gene track (<code class="docutils literal notranslate"><span class="pre">-draw</span> <span class="pre">gene</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="coordinates_plot.html">11. Coordinates track (<code class="docutils literal notranslate"><span class="pre">-draw</span> <span class="pre">coordinates</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="heatmap.html">12. Heatmap track (<code class="docutils literal notranslate"><span class="pre">-bamplot</span> <span class="pre">heatmap</span></code>)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="version_history.html">13. Version History</a></li>
 </ul>