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nnn911 authored Nov 19, 2024
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Expand Up @@ -21,10 +21,12 @@ The modifier calculates the root mean square deviation (RMSD) of atomic coordina

Additionally, it provides an RMSD value for each atom.

## Parameters
## Parameters

- `only_selected` / "Use only selected particles": This option allows alignment using only selected particles as the reference. `Default = True`
- `reference_frame` / "Reference frame": Specifies the frame to use as the reference for alignment. `Default = 0`
| Variable Name | Human-Readable Name | Description | Default Value |
|---------------------|-----------------------------|------------------------------------------------------------------|---------------|
| `only_selected` | **Use only selected particles** | Allows alignment using only selected particles as the reference. | `True` |
| `reference_frame` | **Reference frame** | Specifies the frame to use as the reference for alignment. | `0` |

## Example

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