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@stjudecab St. Jude Center for Applied Bioinformatics (CAB)

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    9 repositories

    • fusion-report

      Public
      Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
      Python
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • containers

      Public
      Bioinformatics containers used in St. Jude CAB
      Perl
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 6, 2025Feb 6, 2025

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •288•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • CoCoRV_nextflow_singularity

      Public
      Implementation of CoCoRV pipeline using Nextflow and Singularity
      Perl
      •
      MIT License
      •0•2•0•0•Updated Dec 6, 2024Dec 6, 2024

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •752•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • st-workshop

      Public
      MIT License
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • tools

      Public
      Python package with helper tools for the nf-core community.
      Python
      •
      MIT License
      •194•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • stjudecab.github.io

      Public
      Official website for St. Jude CAB
      JavaScript
      •76•4•0•0•Updated Jun 5, 2024Jun 5, 2024

    • CoCoRV_nextflow_conda

      Public
      Implementation of CoCoRV pipeline using Nextflow and Micromamba
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Mar 26, 2024Mar 26, 2024