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@opencb Open source for Computational Biology

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    22 repositories

    • opencga

      Public
      An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
      Java
      •
      Apache License 2.0
      •98•167•444•20•Updated Jan 17, 2025Jan 17, 2025

    • jsorolla

      Public
      JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
      JavaScript
      •
      Apache License 2.0
      •29•42•100•5•Updated Jan 17, 2025Jan 17, 2025

    • java-common-libs

      Public
      OpenCB common libs project. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
      Java
      •
      Apache License 2.0
      •26•3•6•5•Updated Jan 17, 2025Jan 17, 2025

    • cellbase

      Public
      High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
      Java
      •
      Apache License 2.0
      •53•92•144•22•Updated Jan 16, 2025Jan 16, 2025

    • biodata

      Public
      Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
      Java
      •
      Apache License 2.0
      •34•29•44•9•Updated Jan 16, 2025Jan 16, 2025

    • argus

      Public
      A Python engine for testing and benchmarking REST web services. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/
      Python
      •
      Apache License 2.0
      •2•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • oskar

      Public
      Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics
      Java
      •
      Apache License 2.0
      •1•4•13•3•Updated May 16, 2023May 16, 2023

    • bionetdb

      Public
      BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database
      JavaScript
      •
      Apache License 2.0
      •7•7•5•3•Updated Nov 15, 2022Nov 15, 2022

    • iva

      Public
      Generic Interactive Variant Analysis browser
      JavaScript
      •
      Apache License 2.0
      •18•29•19•7•Updated Apr 12, 2022Apr 12, 2022

    • opencb.io

      Public
      1•0•0•0•Updated Sep 15, 2020Sep 15, 2020

    • genome-maps

      Public
      An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
      HTML
      •
      GNU General Public License v2.0
      •10•39•22•1•Updated Sep 27, 2018Sep 27, 2018

    • hpg-bigdata

      Public
      This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster
      Java
      •
      Apache License 2.0
      •14•17•23•1•Updated Apr 13, 2018Apr 13, 2018

    • hpg-aligner

      Public
      HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
      C
      •
      GNU General Public License v2.0
      •13•34•9•1•Updated Jul 7, 2017Jul 7, 2017

    • hpg-libs

      Public
      C libs for HPG project
      C
      •
      GNU General Public License v2.0
      •7•4•5•1•Updated Jul 7, 2017Jul 7, 2017

    • hpg-pore

      Public
      Nanopore desc
      Java
      •
      Apache License 2.0
      •3•18•3•0•Updated Aug 22, 2016Aug 22, 2016

    • ga4gh

      Public
      This repository implements the Protobuf and Avro schemas from GA4GH available at http://ga4gh.org/#/schemas
      Java
      •
      Apache License 2.0
      •6•6•0•0•Updated Jul 25, 2016Jul 25, 2016

    • hpg-variant

      Public
      A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
      C
      •
      GNU General Public License v2.0
      •17•13•8•0•Updated Feb 12, 2016Feb 12, 2016

    • cell-maps

      Public
      An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks
      HTML
      •
      GNU General Public License v2.0
      •8•9•5•0•Updated Feb 4, 2016Feb 4, 2016

    • datastore

      Public
      Datastore library for querying RDBMS and NoSQL databases
      Java
      •
      Apache License 2.0
      •8•1•4•0•Updated Jan 22, 2016Jan 22, 2016

    • easyngs

      Public
      EasyNGS provide a rich and interactive web application for NGS data processing
      HTML
      •
      Apache License 2.0
      •2•4•1•0•Updated Oct 28, 2015Oct 28, 2015

    • variant

      Public
      Variant is an ambitious project aimed to provide a complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
      JavaScript
      •5•2•1•0•Updated Feb 6, 2015Feb 6, 2015

    • opencb.github.io

      Public
      CSS
      •1•1•0•0•Updated Aug 7, 2014Aug 7, 2014