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    67 repositories

    • WatSeqAnalysis

      Public
      Analysis code and pipelines supporting the WatSeq project
      R
      •0•1•0•0•Updated Jun 10, 2024Jun 10, 2024

    • dtool-irods

      Public
      Add iRODS support to dtool
      Python
      •
      MIT License
      •3•0•0•0•Updated Nov 1, 2021Nov 1, 2021

    • gitcourse

      Public
      testing fork
      1•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • omero-ansible

      Public
      Ansible scripts for installing and configuring an OMERO server.
      Shell
      •
      MIT License
      •3•3•0•0•Updated Mar 22, 2021Mar 22, 2021

    • Boleracea-AssociativeTranscriptomics

      Public
      R
      •2•1•0•0•Updated Feb 10, 2021Feb 10, 2021

    • sr-dispersal

      Public
      Website for running aeciospore dispersal model
      Python
      •1•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • aiutils

      Public
      dtoolAI utilities
      Python
      •0•0•0•0•Updated Jan 29, 2021Jan 29, 2021

    • coulter_counter_fitting

      Public
      R code for fitting mixture distribution models to Coulter counter data
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2021Jan 21, 2021

    • sequenceserver-docker

      Public
      JavaScript
      •
      MIT License
      •1•0•0•0•Updated Jan 18, 2021Jan 18, 2021

    • expvip-ansible

      Public
      Ansible script for provisining expVIP
      Ruby
      •
      MIT License
      •1•0•0•0•Updated Nov 6, 2020Nov 6, 2020

    • dtoolai

      Public
      Dtool AI reproducible AI library
      Python
      •
      MIT License
      •1•3•6•0•Updated Jun 25, 2020Jun 25, 2020

    • dmaudit

      Public
      Scripts to perform audits of bioinformatics data in a directory tree
      Python
      •0•0•0•0•Updated Sep 23, 2019Sep 23, 2019

    • foldatlas

      Public
      A repository for genome-scale RNA structure probing data
      JavaScript
      •
      Other
      •5•1•0•0•Updated Jul 30, 2019Jul 30, 2019

    • jicirodsmanager

      Public
      Python tools to manage users/groups/quotas/namespaces in an iRODS zone
      Python
      •
      MIT License
      •1•2•0•0•Updated May 7, 2019May 7, 2019

    • FISHcount

      Public
      Software for counting single RNA molecules using analysis of FISH data
      Python
      •0•8•2•0•Updated Apr 25, 2019Apr 25, 2019

    • BaSAR

      Public
      Bayesian Spectral Analysis in R
      R
      •0•0•0•0•Updated Mar 28, 2019Mar 28, 2019

    • kilombo

      Public
      Kilobot simulator in C
      C
      •
      Other
      •16•44•19•1•Updated Nov 19, 2018Nov 19, 2018

    • antirrhinum-hz-pipeline

      Public
      Scripts used to analyse NGS data generated as part of the Evolutionary Dynamics Underlying Species Diversification grant.
      R
      •0•0•0•0•Updated Nov 17, 2017Nov 17, 2017

    • slurmtools

      Public
      Tools to make working with SLURM easier
      Python
      •0•2•0•0•Updated Oct 10, 2017Oct 10, 2017

    • jicgo

      Public
      Simple analysis automation tool
      Python
      •0•0•0•0•Updated Sep 11, 2017Sep 11, 2017

    • dtool-info

      Public
      Dtool plugin for accessing information from datasets and collections
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 24, 2017Aug 24, 2017

    • dbluesea

      Public
      Store and retrieve datasets from Azure storage
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 7, 2017Aug 7, 2017

    • azure-experiments

      Public
      Experiments with data processing in Azure
      Python
      •0•0•0•0•Updated Aug 3, 2017Aug 3, 2017

    • dtoolsid

      Public
      Dtool experimental branch CLI
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 31, 2017Jul 31, 2017

    • dirods

      Public
      Mange dtool datasets in iRODS
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2017Jul 25, 2017

    • jobarchitect

      Public
      Tools for batching jobs and dealing with file paths
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 19, 2017Jun 19, 2017

    • SLURM-cheat-sheet

      Public
      Cheat sheet for interacting with the SLURM scheulder
      3•17•1•0•Updated Jun 1, 2017Jun 1, 2017

    • dserve

      Public
      Serve dtool DataSets over HTTP
      Python
      •
      MIT License
      •0•0•0•0•Updated May 15, 2017May 15, 2017

    • dtool

      Public
      Tool for management of JIC data sets
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 25, 2017Apr 25, 2017

    • dtoolutils

      Public
      Utilities for working with dtoolcore
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2017Apr 24, 2017