Skip to content
This repository has been archived by the owner on Mar 15, 2024. It is now read-only.

Commit

Permalink
update
Browse files Browse the repository at this point in the history
  • Loading branch information
orangeSi committed Nov 25, 2018
1 parent 26fd527 commit 0871e7f
Show file tree
Hide file tree
Showing 15 changed files with 1,639 additions and 342 deletions.
146 changes: 141 additions & 5 deletions example/feature.color.label.conf9
Original file line number Diff line number Diff line change
@@ -1,12 +1,148 @@
#those options default are:feature_id 10 black medium_up -45 1
#feature_label_size,feature_label_color,pos_feature_label,label_rotate_angle,padding_feature_label,feature_order,feature_label_order,feature_height_ratio

gene_s410000000 feature_shift_y -5
gene_s410000000 feature_height_ratio 2
#gene_s410000000 feature_shift_y +0.5
gene_s410000000 feature_shift_y_unit backbone
gene_s410000000 feature_shift_y +2.5
gene_s410000000 feature_height_ratio 5
gene_s410000000 feature_color red
gene_s410000000 feature_shape circle_point
gene_s410000000 feature_border_size 1
#gene_s410000000 feature_shape circle_point
gene_s410000000 feature_shape rect
gene_s410000000 feature_border_size 0
gene_s410000000 feature_border_color black

gene_s4100000 feature_shift_y +0.5

gene_s4100000 feature_shift_y -0.5
#gene_s4100000 feature_shift_y -5
#gene_s4100000 feature_shift_y 0
gene_s4100000 feature_height_ratio 10
gene_s4100000 feature_shape circle_point
gene_s4100000 feature_shift_y_unit radius # radius or backbone
#gene_s4100000 feature_shape rect
gene_s4100000 feature_color black


#exit

gene_s1090000 feature_shift_y -10.5
gene_s1060000 feature_shift_y -10.5
gene_s1080000 feature_shift_y +10.5
gene_s1070000 feature_shift_y +10.5
gene_s1020000 feature_shift_y +10.5
gene_s1030000 feature_shift_y +10.5
gene_s1100000 feature_shift_y -10.5
gene_s11000001 feature_shift_y -10.5
gene_s1040000 feature_shift_y +10.5
gene_s1010000 feature_shift_y +10.5
gene_s1050000 feature_shift_y +10.5
gene_s109000 feature_shift_y -10.5
gene_s106000 feature_shift_y -10.5
gene_s108000 feature_shift_y +10.5
gene_s107000 feature_shift_y +10.5
gene_s102000 feature_shift_y +10.5
gene_s103000 feature_shift_y +10.5
gene_s110000 feature_shift_y -10.5
gene_s104000 feature_shift_y +10.5
gene_s101000 feature_shift_y +10.5
gene_s105000 feature_shift_y +10.5
gene_s109 feature_shift_y -10.5
gene_s106 feature_shift_y -10.5
gene_s108 feature_shift_y +10.5
gene_s107 feature_shift_y +10.5
gene_s102 feature_shift_y +10.5
gene_s103 feature_shift_y +10.5
gene_s110 feature_shift_y -10.5
gene_s104 feature_shift_y +10.5
gene_s101 feature_shift_y +10.5
gene_s105 feature_shift_y +10.5
gene_s2090000 feature_shift_y -10.5
gene_s2060000 feature_shift_y -10.5
gene_s2080000 feature_shift_y +10.5
gene_s2070000 feature_shift_y +10.5
gene_s2020000 feature_shift_y +10.5
gene_s2030000 feature_shift_y +10.5
gene_s2100000 feature_shift_y -10.5
gene_s2040000 feature_shift_y +10.5
gene_s2010000 feature_shift_y +10.5
gene_s2050000 feature_shift_y +10.5
gene_s209000 feature_shift_y -10.5
gene_s206000 feature_shift_y -10.5
gene_s208000 feature_shift_y +10.5
gene_s207000 feature_shift_y +10.5
gene_s202000 feature_shift_y +10.5
gene_s203000 feature_shift_y +10.5
gene_s210000 feature_shift_y -10.5
gene_s204000 feature_shift_y +10.5
gene_s201000 feature_shift_y +10.5
gene_s205000 feature_shift_y +10.5
gene_s209 feature_shift_y -10.5
gene_s206 feature_shift_y -10.5
gene_s208 feature_shift_y +10.5
gene_s207 feature_shift_y +10.5
gene_s202 feature_shift_y +10.5
gene_s203 feature_shift_y +10.5
gene_s210 feature_shift_y -10.5
gene_s204 feature_shift_y +10.5
gene_s201 feature_shift_y +10.5
gene_s205 feature_shift_y +10.5
gene_s3090000 feature_shift_y -10.5
gene_s3060000 feature_shift_y -10.5
gene_s3080000 feature_shift_y +10.5
gene_s3070000 feature_shift_y +10.5
gene_s3020000 feature_shift_y +10.5
gene_s3030000 feature_shift_y +10.5
gene_s3100000 feature_shift_y -10.5
gene_s3040000 feature_shift_y +10.5
gene_s3010000 feature_shift_y +10.5
gene_s3050000 feature_shift_y +10.5
gene_s309000 feature_shift_y -10.5
gene_s306000 feature_shift_y -10.5
gene_s308000 feature_shift_y +10.5
gene_s307000 feature_shift_y +10.5
gene_s302000 feature_shift_y +10.5
gene_s303000 feature_shift_y +10.5
gene_s310000 feature_shift_y -10.5
gene_s304000 feature_shift_y +10.5
gene_s301000 feature_shift_y +10.5
gene_s305000 feature_shift_y +10.5
gene_s309 feature_shift_y -10.5
gene_s306 feature_shift_y -10.5
gene_s308 feature_shift_y +10.5
gene_s307 feature_shift_y +10.5
gene_s302 feature_shift_y +10.5
gene_s303 feature_shift_y +10.5
gene_s310 feature_shift_y -10.5
gene_s304 feature_shift_y +10.5
gene_s301 feature_shift_y +10.5
gene_s305 feature_shift_y +10.5
gene_s4090000 feature_shift_y -10.5
gene_s4060000 feature_shift_y -10.5
gene_s4080000 feature_shift_y +10.5
gene_s4070000 feature_shift_y +10.5
gene_s4020000 feature_shift_y +10.5
gene_s4030000 feature_shift_y +10.5
#gene_s410000000 feature_shift_y +10.5
#gene_s4100000 feature_shift_y -10.5
gene_s4040000 feature_shift_y +10.5
gene_s4010000 feature_shift_y +10.5
gene_s4050000 feature_shift_y +10.5
gene_s409000 feature_shift_y -10.5
gene_s406000 feature_shift_y -10.5
gene_s408000 feature_shift_y +10.5
gene_s407000 feature_shift_y +10.5
gene_s402000 feature_shift_y +10.5
gene_s403000 feature_shift_y +10.5
gene_s410000 feature_shift_y -10.5
gene_s404000 feature_shift_y +10.5
gene_s401000 feature_shift_y +10.5
gene_s405000 feature_shift_y +10.5
gene_s409 feature_shift_y -10.5
gene_s406 feature_shift_y -10.5
gene_s408 feature_shift_y +10.5
gene_s407 feature_shift_y +10.5
gene_s402 feature_shift_y +10.5
gene_s403 feature_shift_y +10.5
gene_s410 feature_shift_y -10.5
gene_s404 feature_shift_y +10.5
gene_s401 feature_shift_y +10.5
gene_s405 feature_shift_y +10.5
4 changes: 4 additions & 0 deletions example/list5.1
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
s1 s1.gff s1.seq s1 1+1 3000+50 s1 3000 6000+10 s1 6000-20 10000 s1000 2000 6000 s10000 2000 6000 s10000 6000 10000
s2 s2.gff s2.seq s2 1 9000 s2000 2000 6000 s20000 2000 6000 s20000 6000 10000
s3 s3.gff s3.seq
s4 s4.gff s4.seq s4000 2000 6000 s40000 1000 8000 s40000 8000 10000
8 changes: 4 additions & 4 deletions example/main.9.conf
Original file line number Diff line number Diff line change
Expand Up @@ -12,18 +12,18 @@ width_ratio_ref_cluster_legend = 0.1-0.75-0.15 # *


## global setting start, specific setting in feature_setting
feature_shape=rect # only arrow, rect for figure shape, not support round_rect and circle_point yet
feature_shape=arrow # only arrow, rect for figure shape, not support round_rect and circle_point yet
feature_arrow_width_extent=0.3
feature_label_size=10
feature_label_color=black
feature_shift_y=0
feature_height_ratio=0.98 # defined feature height
feature_height_ratio=10 # defined feature height
track_color=blue # green or #02030
feature_color=rgb(50,205,50)
feature_border_size=0
feature_border_color=black
genome_height_ratio=1 # mean genome height extend ratio
feature_arrow_sharp_extent=0.7 # bigger mean sharper arrow
genome_height_ratio=0.1 # mean genome height extend ratio
feature_arrow_sharp_extent=5 # bigger mean sharper arrow
# order for display
track_order=1
feature_order=2
Expand Down
14 changes: 7 additions & 7 deletions example/out.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
8 changes: 4 additions & 4 deletions example/out2.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
8 changes: 4 additions & 4 deletions example/out3.1.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
8 changes: 4 additions & 4 deletions example/out3.2.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
8 changes: 4 additions & 4 deletions example/out3.svg
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading

0 comments on commit 0871e7f

Please sign in to comment.