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v2.4.3

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@github-actions github-actions released this 19 Aug 15:46
· 2844 commits to develop since this release
a373e8a

What's Changed

  • TASK-1593 - Variant-export-run : opencga-internal unknown parameter '--compress' by @j-coll in #2071
  • TASK-1587 - The parameters of the body give an error by @juanfeSanahuja in #2068
  • TASK-1519 - Variant Export in different output formats fails by @j-coll in #2072
  • TASK-1120 - Errors in model MetaWS when class not found by @imedina in #2077
  • TASK-1189 - Logout on expired session by @juanfeSanahuja in #2074
  • TASK-1431 - CLi: error when using --host param by @juanfeSanahuja in #2075
  • TASK-1487 - CLI: "Server Not Found" hidden by "Incorrect user or password" by @juanfeSanahuja in #2076
  • TASK-563 - CLI: WS under the admin section are not in opencga.sh nor opencga-admin.sh by @juanfeSanahuja in #2067
  • TASK-1280 - Port Patch Version 1.1.3 by @j-coll in #2082
  • TASK-1254 - Cannot run program "hadoop-ssh.sh" Permission denied by @j-coll in #2065
  • TASK-1194 - Add new fields to Catalog data model by @pfurio in #2079
  • TASK-1386 - Shorten catalog indexed field variables by @pfurio in #2080
  • TASK-1285 - Fix acl behaviour by @pfurio in #2083
  • TASK-1664 - Error during migration of TASK-1470 by @pfurio in #2078
  • TASK-1706 - NPE in variant export while avro serialization by @j-coll in #2085
  • TASK-1708 - Variant export TPED fails if no output file name is provided by @j-coll in #2086
  • TASK-1711 - Variant Export PARQUET wrong generated file by @j-coll in #2087
  • TASK-1274 - VariantQueryException: Cannot Export VCF - Missing gene regions by @j-coll in #2088
  • TASK-1713 - Variant Export using MR when should be using iterator on small queries by @j-coll in #2089
  • TASK-1715 - Missing PopulationFrequency filters at VariantFilterBuilder by @j-coll in #2090
  • TASK-1732 - Variant Export skips MapReduce for long queries using sample index by @j-coll in #2095
  • TASK-1726 - Job aborted without enough error details by @j-coll in #2093
  • TASK-1734 - Variant export MapReduce is filling the worker node disk by @j-coll in #2092
  • TASK-1735 - Variant export : Sample 'mySample:1/1' not found by @j-coll in #2094
  • TASK-1746 - Variant query/export from sample index with covered queries does not need variants table intersection by @j-coll in #2096
  • TASK-1722 - Fix internal interpreter CLI name by @imedina in #2091
  • TASK-1752 - Filter by chromosome-Linked segregation doesn't filter by chromosome by @j-coll in #2100
  • TASK-1751 - Error during migration of TASK-1664 by @pfurio in #2098
  • TASK-1756 - Variant export ClassCastException: java.lang.Double cannot be cast to java.lang.Float by @j-coll in #2102
  • TASK-1537 - Fix the Exomiser wrapper analysis: it fails when multiple studies exist by @jtarraga in #2101
  • TASK-1750 - Fix RGA performance issues by @pfurio in #2097
  • TASK-1751 - Error during migration of TASK-1664 by @pfurio in #2103
  • TASK-1481 - Fix the alignment command: coverage-index-run by @jtarraga in #2104
  • TASK-1576 - Fix the inferred sex analysis: the karyotypic sex inferred is missing by @jtarraga in #2105
  • TASK-1760 - Fix exomiser interpretation analysis by @jtarraga in #2106
  • TASK-1497 - Fix the variant command: relatedness-run by @jtarraga in #2107
  • TASK-1763 - Filter by chromosome-linked segregation at "sample" param. Defect of TASK-1752 by @j-coll in #2108

Full Changelog: v2.4.2...v2.4.3