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TASK-6219 - Automatic Variant Secondary Index #2495

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TASK-6219 - Automatic Variant Secondary Index #2495

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@j-coll j-coll commented Aug 19, 2024

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pfurio and others added 16 commits June 27, 2024 15:29
@pfurio
core: add new operations configuration, #TASK-6219
744de3c
@pfurio
master: first draft of the VariantOperationManager, #TASK-6219
6d7bcfb
@pfurio
core: add new operation index data models, #TASK-6219
b79ef94
@pfurio
master: implement VariantOperationOrchestrator, #TASK-6219
5abee26
@pfurio
master: retry secondary indexes, #TASK-6219
eef6834
@pfurio
core: add DataField descriptions, #TASK-6219
11492e6
@pfurio
Merge branch 'develop' into TASK-6219
95cacb3
@pfurio
app: add migration, #TASK-6219
b2cbb62
@pfurio
master: add Orchestrator test, #TASK-6219
023997d
@pfurio
master: use new VariantOperationOrchestrator, #TASK-6219
ddc9ae2
@pfurio
master: rename Orchestrator for Janitor, #TASK-6219
b7cad6f
@j-coll
master: Clean variables. #TASK-6219
d6074fc
@j-coll
storage: Add status to ProjectMetadata for variant-annotation and var…
9616d1e 
…iant-secondary-annotation #TASK-6219
@j-coll
analysis: Synchronize to catalog annotation and secondary annotation …
0a765b7 
…index status #TASK-6219
@j-coll
storage: Synchronize secondary sample index changes. #TASK-6219
edb1c04
@j-coll
master: VariantOperationJanitor extends MonitorParentDaemon. #TASK-6219
ca80b71
@j-coll j-coll requested a review from pfurio August 19, 2024 09:46
@halender
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Task linked: TASK-6219 Automatic Variant Secondary Index

@j-coll j-coll changed the title Task 6219 TASK-6219 - Automatic Variant Secondary Index Aug 19, 2024
pfurio
pfurio previously approved these changes Aug 19, 2024
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pfurio
pfurio previously approved these changes Nov 8, 2024
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pfurio
pfurio previously approved these changes Dec 5, 2024
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@j-coll j-coll changed the base branch from release-3.x.x to develop December 19, 2024 11:02
@j-coll j-coll dismissed pfurio’s stale review December 19, 2024 11:02

The base branch was changed.

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j-coll commented Dec 19, 2024 •
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PR rebased. Should be equivalent to the old PR before push force:
release-3.x.x...TASK-6219-release3

git diff develop TASK-6219  > TASK-6219.develop.patch
git diff release-3.x.x TASK-6219-release3  > TASK-6219.release3patch 

diff TASK-6219.release3.patch TASK-6219.develop.patch

Some visual tools to check the diff might be nicer, like "meld"

pfurio
pfurio previously approved these changes Dec 20, 2024
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@j-coll @halender @pfurio