New stable release v1.4.0

opencb · Mar 18, 2019 · ea4fdf3 · ea4fdf3
1 parent 960fb44
commit ea4fdf3
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Showing 21 changed files with 28 additions and 28 deletions.
diff --git a/opencga-analysis/pom.xml b/opencga-analysis/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>..</relativePath>
     </parent>
 

diff --git a/opencga-app/pom.xml b/opencga-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-catalog/pom.xml b/opencga-catalog/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-client/pom.xml b/opencga-client/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-core/pom.xml b/opencga-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-server/pom.xml b/opencga-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-storage/opencga-storage-app/pom.xml b/opencga-storage/opencga-storage-app/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-storage/opencga-storage-benchmark/pom.xml b/opencga-storage/opencga-storage-benchmark/pom.xml
@@ -21,7 +21,7 @@
     <parent>
         <artifactId>opencga-storage</artifactId>
         <groupId>org.opencb.opencga</groupId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
     </parent>
     <modelVersion>4.0.0</modelVersion>
 

diff --git a/opencga-storage/opencga-storage-core/pom.xml b/opencga-storage/opencga-storage-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/...ore/src/main/java/org/opencb/opencga/storage/hadoop/variant/io/VariantExporterDriver.java b/...ore/src/main/java/org/opencb/opencga/storage/hadoop/variant/io/VariantExporterDriver.java
@@ -49,7 +49,7 @@
  * hbase_conf=$(hbase classpath | tr ":" "\n" | grep "/conf" | tr "\n" ":")
  * export HADOOP_CLASSPATH=${hbase_conf}:$PWD/libs/avro-1.7.7.jar:$PWD/libs/jackson-databind-2.6.6.jar:$PWD/libs/jackson-core-2.6.6.jar
  * export HADOOP_CLASSPATH=${HADOOP_CLASSPATH}:$PWD/libs/jackson-annotations-2.6.6.jar
- * yarn jar opencga-storage-hadoop-core-1.4.0-rc3-dev-jar-with-dependencies.jar \
+ * yarn jar opencga-storage-hadoop-core-1.4.0-jar-with-dependencies.jar \
  *      org.opencb.opencga.storage.hadoop.variant.io.VariantExporterDriver \
  *      opencga_variants study myStudy --of avro --output my.variants.avro --region 22
  *

diff --git a/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml b/opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-deps/pom.xml
@@ -50,13 +50,13 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage-hadoop</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <!--<relativePath>../pom.xml</relativePath>-->
     </parent>
 
     <!--<groupId>org.opencb.opencga</groupId>-->
     <artifactId>opencga-storage-hadoop-deps</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
 
     <properties>
         <checkstyle.skip>true</checkstyle.skip>

diff --git a/opencga-storage/opencga-storage-hadoop/pom.xml b/opencga-storage/opencga-storage-hadoop/pom.xml
@@ -73,12 +73,12 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
     <artifactId>opencga-storage-hadoop</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
 
     <modules>

diff --git a/opencga-storage/opencga-storage-mongodb/pom.xml b/opencga-storage/opencga-storage-mongodb/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-storage/opencga-storage-server/pom.xml b/opencga-storage/opencga-storage-server/pom.xml
@@ -22,7 +22,7 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga-storage</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 

diff --git a/opencga-storage/pom.xml b/opencga-storage/pom.xml
@@ -22,13 +22,13 @@
     <parent>
         <groupId>org.opencb.opencga</groupId>
         <artifactId>opencga</artifactId>
-        <version>1.4.0-rc3-dev</version>
+        <version>1.4.0</version>
         <relativePath>../pom.xml</relativePath>
     </parent>
 
     <!-- Version must be set to a literal, variables cannot be used in nested modules -->
     <artifactId>opencga-storage</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
 
     <properties>

diff --git a/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/MetaTests/MetaTests/content.txt b/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/MetaTests/MetaTests/content.txt
@@ -4,7 +4,7 @@
 
 !|Table: Rest Fixture | $baseURL |
 | GET | /v1/meta/about |200|  Content-Type: application/json ||
-|let||js|response.jsonbody.response[0].result[0].Version|1.4.0-rc3-dev|
+|let||js|response.jsonbody.response[0].result[0].Version|1.4.0|
 
 !3 OpenCGA Status
 !|Table: Rest Fixture | $baseURL |

diff --git a/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/SuiteSetUp/content.txt b/opencga-test/fitnesse/FitNesseRoot/OpenCga/TestsSuits/SuiteSetUp/content.txt
@@ -1,6 +1,6 @@
 !define TEST_SYSTEM {slim}
 !path target/appassembler/dependencies/*.jar
-!define OPENCGA_VERSION {opencga-1.4.0-rc3-dev}
+!define OPENCGA_VERSION {opencga-1.4.0}
 !define TEST_HOST {qa.opencb.org}
 !define VERSION {v1}
 

diff --git a/opencga-test/pom.xml b/opencga-test/pom.xml
@@ -24,7 +24,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga-test</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
 
     <dependencies>

diff --git a/opencga-web/lib/jsorolla b/opencga-web/lib/jsorolla
diff --git a/pom.xml b/pom.xml
@@ -22,7 +22,7 @@
 
     <groupId>org.opencb.opencga</groupId>
     <artifactId>opencga</artifactId>
-    <version>1.4.0-rc3-dev</version>
+    <version>1.4.0</version>
     <packaging>pom</packaging>
     <name>OpenCGA</name>
 
@@ -37,11 +37,11 @@
     </modules>
 
     <properties>
-        <opencga.version>1.4.0-rc3-dev</opencga.version>
+        <opencga.version>1.4.0</opencga.version>
         <java.version>1.8</java.version>
-        <java-common-libs.version>3.7.3-SNAPSHOT</java-common-libs.version>
-        <biodata.version>1.4.3-SNAPSHOT</biodata.version>
-        <cellbase.version>4.6.2-SNAPSHOT</cellbase.version>
+        <java-common-libs.version>3.7.3</java-common-libs.version>
+        <biodata.version>1.4.3</biodata.version>
+        <cellbase.version>4.6.2</cellbase.version>
         <hpg-bigdata.version>1.0.0-beta4</hpg-bigdata.version>
         <bionet.version>0.2.0-SNAPSHOT</bionet.version>
         <jackson.version>2.9.7</jackson.version>