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Merge pull request #2375 from opencb/TASK-4389 #846

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Merge pull request #2375 from opencb/TASK-4389

Merge pull request #2375 from opencb/TASK-4389 #846

Triggered via push February 15, 2024 14:40
@pfuriopfurio
pushed 4c9fc9c
develop
Status Failure
Total duration 1h 59m 52s
Artifacts 1

develop.yml

on: push
build  /  Build Java app
16m 11s
build / Build Java app
test  /  Execute Sonar Analysis
8m 57s
test / Execute Sonar Analysis
test  /  Execute JUnit and Jacoco tests
1h 43m
test / Execute JUnit and Jacoco tests
deploy-docker  /  Push Docker image
deploy-docker / Push Docker image
deploy-maven  /  Deploy to Maven and GitHub Packages
deploy-maven / Deploy to Maven and GitHub Packages
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68 errors and 3 warnings
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L77
Parameter 'user.organization' is missing or null.
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L47
Parameter 'user.organization' is missing or null.
RgaEngineTest.testFacet: opencga-analysis/src/test/java/org/opencb/opencga/analysis/rga/RgaEngineTest.java#L1
org/eclipse/jetty/util/ssl/SslContextFactory$Client
VariantCatalogQueryUtilsTest.queryByFamilyNotFound: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantCatalogQueryUtilsTest.java#L565
Expected: (exception with message a string containing "Missing families: asdf not found" and an instance of org.opencb.opencga.catalog.exceptions.CatalogException) but: exception with message a string containing "Missing families: asdf not found" message was "Missing families: 'asdf' not found." Stacktrace was: org.opencb.opencga.catalog.exceptions.CatalogException: Missing families: 'asdf' not found. at org.opencb.opencga.catalog.exceptions.CatalogException.notFound(CatalogException.java:42) at org.opencb.opencga.catalog.managers.FamilyManager.internalGet(FamilyManager.java:172) at org.opencb.opencga.catalog.managers.ResourceManager.internalGet(ResourceManager.java:66) at org.opencb.opencga.catalog.managers.ResourceManager.internalGet(ResourceManager.java:60) at org.opencb.opencga.catalog.managers.ResourceManager.get(ResourceManager.java:108) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.parseQuery(VariantCatalogQueryUtils.java:404) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.parseQuery(VariantCatalogQueryUtils.java:262) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtilsTest.queryByFamilyNotFound(VariantCatalogQueryUtilsTest.java:565) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54) at org.junit.rules.RunRules.evaluate(RunRules.java:20) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.junit.runners.Suite.runChild(Suite.java:128) at org.junit.runners.Suite.runChild(Suite.java:27) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:95) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69) at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162) at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
ExecutionDaemonTest.testCreateOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testDependsOnJobs: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testBuildCli: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testDependsOnMultiStudy: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJobFailMissingExecutionResult: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRegisterFilesSuccessfully: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testWebhookNotification: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJobFail: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testUseEmptyDirectory: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.registerMalformedVcfFromExecutedJobTest: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCreateDefaultOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCheckLogs: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCheckLogsNoPermissions: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testNotEmptyOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJob: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testProjectScopeTask: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
SampleWSServerTest.search: opencga-server/src/test/java/org/opencb/opencga/server/rest/SampleWSServerTest.java#L69
Incorrect user or password.
CellBaseUtilsTest.testGetGo[https://ws.zettagenomics.com/cellbase/v5.1/?assembly=grch38%dataRelease=1]: opencga-storage/opencga-storage-core/src/test/java/org/opencb/opencga/storage/core/utils/CellBaseUtilsTest.java#L119
Values should be different. Actual: 0
HadoopVariantExporterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/io/HadoopVariantExporterTest.java#L1
org/eclipse/jetty/util/ssl/SslContextFactory$Client
test / Execute JUnit and Jacoco tests
There were 23 failed tests
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L77
Parameter 'user.organization' is missing or null.
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L47
Parameter 'user.organization' is missing or null.
RgaEngineTest.testFacet: opencga-analysis/src/test/java/org/opencb/opencga/analysis/rga/RgaEngineTest.java#L1
org/eclipse/jetty/util/ssl/SslContextFactory$Client
VariantCatalogQueryUtilsTest.queryByFamilyNotFound: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantCatalogQueryUtilsTest.java#L565
Expected: (exception with message a string containing "Missing families: asdf not found" and an instance of org.opencb.opencga.catalog.exceptions.CatalogException) but: exception with message a string containing "Missing families: asdf not found" message was "Missing families: 'asdf' not found." Stacktrace was: org.opencb.opencga.catalog.exceptions.CatalogException: Missing families: 'asdf' not found. at org.opencb.opencga.catalog.exceptions.CatalogException.notFound(CatalogException.java:42) at org.opencb.opencga.catalog.managers.FamilyManager.internalGet(FamilyManager.java:172) at org.opencb.opencga.catalog.managers.ResourceManager.internalGet(ResourceManager.java:66) at org.opencb.opencga.catalog.managers.ResourceManager.internalGet(ResourceManager.java:60) at org.opencb.opencga.catalog.managers.ResourceManager.get(ResourceManager.java:108) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.parseQuery(VariantCatalogQueryUtils.java:404) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.parseQuery(VariantCatalogQueryUtils.java:262) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtilsTest.queryByFamilyNotFound(VariantCatalogQueryUtilsTest.java:565) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54) at org.junit.rules.RunRules.evaluate(RunRules.java:20) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.junit.runners.Suite.runChild(Suite.java:128) at org.junit.runners.Suite.runChild(Suite.java:27) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:95) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69) at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162) at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
ExecutionDaemonTest.testCreateOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testDependsOnJobs: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testBuildCli: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testDependsOnMultiStudy: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJobFailMissingExecutionResult: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRegisterFilesSuccessfully: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testWebhookNotification: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJobFail: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testUseEmptyDirectory: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.registerMalformedVcfFromExecutedJobTest: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCreateDefaultOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCheckLogs: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCheckLogsNoPermissions: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testNotEmptyOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJob: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testProjectScopeTask: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
SampleWSServerTest.search: opencga-server/src/test/java/org/opencb/opencga/server/rest/SampleWSServerTest.java#L69
Incorrect user or password.
HadoopVariantExporterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/io/HadoopVariantExporterTest.java#L1
org/eclipse/jetty/util/ssl/SslContextFactory$Client
ClinicalInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/ClinicalInterpretationAnalysisTest.java#L77
Parameter 'user.organization' is missing or null.
ExomiserInterpretationAnalysisTest.: opencga-analysis/src/test/java/org/opencb/opencga/analysis/clinical/exomiser/ExomiserInterpretationAnalysisTest.java#L47
Parameter 'user.organization' is missing or null.
RgaEngineTest.testFacet: opencga-analysis/src/test/java/org/opencb/opencga/analysis/rga/RgaEngineTest.java#L1
org/eclipse/jetty/util/ssl/SslContextFactory$Client
VariantCatalogQueryUtilsTest.queryByFamilyNotFound: opencga-analysis/src/test/java/org/opencb/opencga/analysis/variant/manager/VariantCatalogQueryUtilsTest.java#L565
Expected: (exception with message a string containing "Missing families: asdf not found" and an instance of org.opencb.opencga.catalog.exceptions.CatalogException) but: exception with message a string containing "Missing families: asdf not found" message was "Missing families: 'asdf' not found." Stacktrace was: org.opencb.opencga.catalog.exceptions.CatalogException: Missing families: 'asdf' not found. at org.opencb.opencga.catalog.exceptions.CatalogException.notFound(CatalogException.java:42) at org.opencb.opencga.catalog.managers.FamilyManager.internalGet(FamilyManager.java:172) at org.opencb.opencga.catalog.managers.ResourceManager.internalGet(ResourceManager.java:66) at org.opencb.opencga.catalog.managers.ResourceManager.internalGet(ResourceManager.java:60) at org.opencb.opencga.catalog.managers.ResourceManager.get(ResourceManager.java:108) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.parseQuery(VariantCatalogQueryUtils.java:404) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtils.parseQuery(VariantCatalogQueryUtils.java:262) at org.opencb.opencga.analysis.variant.manager.VariantCatalogQueryUtilsTest.queryByFamilyNotFound(VariantCatalogQueryUtilsTest.java:565) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:59) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:56) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.rules.ExpectedException$ExpectedExceptionStatement.evaluate(ExpectedException.java:258) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:26) at org.junit.rules.ExternalResource$1.evaluate(ExternalResource.java:54) at org.junit.rules.RunRules.evaluate(RunRules.java:20) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.junit.runners.Suite.runChild(Suite.java:128) at org.junit.runners.Suite.runChild(Suite.java:27) at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) at org.junit.runners.ParentRunner.run(ParentRunner.java:413) at org.apache.maven.surefire.junitcore.JUnitCore.run(JUnitCore.java:49) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.createRequestAndRun(JUnitCoreWrapper.java:120) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.executeEager(JUnitCoreWrapper.java:95) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:75) at org.apache.maven.surefire.junitcore.JUnitCoreWrapper.execute(JUnitCoreWrapper.java:69) at org.apache.maven.surefire.junitcore.JUnitCoreProvider.invoke(JUnitCoreProvider.java:146) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:385) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:162) at org.apache.maven.surefire.booter.ForkedBooter.run(ForkedBooter.java:507) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:495)
ExecutionDaemonTest.testCreateOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testDependsOnJobs: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testBuildCli: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testDependsOnMultiStudy: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJobFailMissingExecutionResult: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRegisterFilesSuccessfully: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testWebhookNotification: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJobFail: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testUseEmptyDirectory: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.registerMalformedVcfFromExecutedJobTest: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCreateDefaultOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCheckLogs: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testCheckLogsNoPermissions: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testNotEmptyOutDir: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testRunJob: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
ExecutionDaemonTest.testProjectScopeTask: opencga-master/src/test/java/org/opencb/opencga/master/monitor/daemons/ExecutionDaemonTest.java#L85
User 'opencga' not found.
SampleWSServerTest.search: opencga-server/src/test/java/org/opencb/opencga/server/rest/SampleWSServerTest.java#L69
Incorrect user or password.
HadoopVariantExporterTest.: opencga-storage/opencga-storage-hadoop/opencga-storage-hadoop-core/src/test/java/org/opencb/opencga/storage/hadoop/variant/io/HadoopVariantExporterTest.java#L1
org/eclipse/jetty/util/ssl/SslContextFactory$Client
build / Build Java app
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test / Execute Sonar Analysis
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test / Execute JUnit and Jacoco tests
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v3, scacap/action-surefire-report@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
build-folder Expired
1020 MB