family-view and gene-view settings added #236

src/conf/opencga-family-view.settings.js

@@ -0,0 +1,10 @@
+const opencgaFamilyViewSettings = {
+    // merge criterium: uses this array as filter for internal 1D array. Same as settings.table.columns in `clinical-review-cases.settings`.
+    /**
+     * works either with:
+     * - `fields` an explicit list of ids. In this case each field in DataForm needs an id.
+     * - `hiddenFields` a list of fields to exclude
+     */
+    // GEL settings
+    hiddenFields: ["pedigree", "creationDate", "description"]
+};

src/conf/opencga-gene-view.settings.js

@@ -1,5 +1,17 @@
 const opencgaGeneViewSettings = {
-    // set to true if server on which IVA is installed is exposed to Internet (genomemaps.org, ensembl.org).
-    externalLinks: false
-    // TODO add configuration from conf/tools
+    // set to true if the server on which IVA is running is exposed to Internet (for genomemaps.org, ensembl.org).
+    externalLinks: true,
+    // from conf/tools.js
+    protein: {
+        color: {
+            synonymous_variant: "blue",
+            coding_sequence_variant: "blue",
+            missense_variant: "orange",
+            protein_altering_variant: "orange",
+            start_lost: "red",
+            stop_gained: "red",
+            stop_lost: "red",
+            stop_retained_variant: "red"
+        }
+    }
 };

src/index.html

@@ -66,6 +66,8 @@
     <script defer src="conf/variant-interpreter-browser-rd.settings.js"></script>
     <script defer src="conf/variant-interpreter-browser-cancer.settings.js"></script>
     <script defer src="conf/opencga-variant-browser.settings.js"></script>
+    <script defer src="conf/opencga-gene-view.settings.js"></script>
+    <script defer src="conf/opencga-family-view.settings.js"></script>
     <!--    <script src="../lib/jsorolla/src/core/webcomponents/opencga/panels_example.js"></script>-->
     <script src="conf/tools.js"></script>