Basic query CLI is now working. An initial betweenness has been imple…

…mented

bionetdb-app/src/main/java/org/opencb/bionetdb/app/cli/QueryCommandExecutor.java

@@ -0,0 +1,40 @@
+package org.opencb.bionetdb.app.cli;
+
+import org.opencb.bionetdb.core.api.NetworkDBAdaptor;
+import org.opencb.bionetdb.core.neo4j.Neo4JNetworkDBAdaptor;
+import org.opencb.datastore.core.Query;
+
+/**
+ * Created by imedina on 28/09/15.
+ */
+public class QueryCommandExecutor extends CommandExecutor {
+
+    private CliOptionsParser.QueryCommandOptions queryCommandOptions;
+
+    public QueryCommandExecutor(CliOptionsParser.QueryCommandOptions queryCommandOptions) {
+        super(queryCommandOptions.commonOptions.logLevel, queryCommandOptions.commonOptions.conf);
+
+        this.queryCommandOptions = queryCommandOptions;
+    }
+
+    @Override
+    public void execute() {
+
+        try {
+            NetworkDBAdaptor networkDBAdaptor = new Neo4JNetworkDBAdaptor(queryCommandOptions.database);
+
+            if (queryCommandOptions.betweenness) {
+                Query query = new Query("id", queryCommandOptions.id);
+                query.put("nodeLabel", queryCommandOptions.nodeType);
+
+                networkDBAdaptor.betweenness(query);
+            }
+
+        } catch (Exception e) {
+            e.printStackTrace();
+        }
+
+
+    }
+
+}