Merge pull request #64 from openalea/app_info

Add info on the application & update NB
openalea · Aug 31, 2021 · 7396efc · 7396efc
2 parents 3afe637 + 70c2886
commit 7396efc
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diff --git a/example/tutorials/1.import_and_read_MTG.ipynb b/example/tutorials/1.import_and_read_MTG.ipynb
@@ -95,14 +95,6 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "== Line 21: A\tA\t+\t?\n",
-      "Unknown right symbols <filter object at 0x000001D079895820>.\n",
-      "== Line 22: A\tA\t<\t1\n",
-      "Unknown right symbols <filter object at 0x000001D079895730>.\n",
-      "== Line 23: T\tT\t+\t?\n",
-      "Unknown right symbols <filter object at 0x000001D079895820>.\n",
-      "== Line 24: T\tT\t<\t1\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t\n",
-      "Unknown right symbols <filter object at 0x000001D079895490>.\n",
       "MTG : nb_vertices=158, nb_scales=4\n"
      ]
     }
@@ -112,13 +104,6 @@
     "print(g)\n"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
-  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -128,12 +113,21 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 5,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "MTG : nb_vertices=37860, nb_scales=4\n"
+     ]
+    }
+   ],
    "source": [
-    "metaMTG= import_mtgfile(filename=[\"Gariguette\", \"Capriss\"])\n",
-    "print(metaMTG)"
+    "metaMTG= import_mtgfile(filename=[\"Capriss\", \"Ciflorette\", \"Clery\", \"Cir107\", \"Darselect\", \"Gariguette\"])\n",
+    "print(metaMTG)\n",
+    "g=metaMTG"
    ]
   },
   {
@@ -171,7 +165,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -191,9 +185,20 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 7,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "dict_keys(['edge_type', 'label', 'Experiment_name', 'Sample_date', 'Genotype', 'Modality', 'Plant_ID', '_line', 'DBI', 'Stade', 'PETLG', 'LFTLG_CENTRAL', 'LFTLG_LEFT', 'INFLOLG', 'FLWRNUMBER', 'FLWRNUMBER_OPEN', 'FLWRNUMBER_ABORTED', 'SAMPLING', 'FLWRNUMBER_CLOSED'])"
+      ]
+     },
+     "execution_count": 7,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
    "source": [
     "metaMTG.properties().keys()"
    ]
@@ -207,17 +212,37 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 8,
    "metadata": {},
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Darselect : 54 plants\n",
+      "Cir107 : 54 plants\n",
+      "Ciflorette : 54 plants\n",
+      "Gariguette : 54 plants\n",
+      "Capriss : 54 plants\n",
+      "Clery : 54 plants\n"
+     ]
+    }
+   ],
    "source": [
     "plant_number_by_varieties(g=metaMTG)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3 (ipykernel)",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -232,6 +257,13 @@
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
    "version": "3.8.10"
+  },
+  "widgets": {
+   "application/vnd.jupyter.widget-state+json": {
+    "state": {},
+    "version_major": 2,
+    "version_minor": 0
+   }
   }
  },
  "nbformat": 4,