GAFAM: Growing AgroForestry with Apple in Mediterranean climate

Installation

conda install -c conda-forge -c openalea3 openalea.mtg pandas notebook ipython

Data sets

This repository contains the architectural data of 45 apple trees encoding as MTG. The data set is loacated in src/gafam/data with asssociated Python package for automatic and simpler analysis.

Analysis

Here is the variables that can be extracted

Tree (per year)

• Sum( leaf area )
• Sum( GUs Lengths )
• Count( number of GUs )
• Count( FL, VG, LB, EX )
• Mean( angle of +B)
• Mean( nb_leaves )
• Mean( nb_fruits )
• Mean( nb_flowers )
• Mean( fruit_drops )

Trunk/ Main axis (per year) (symbol A)

• Sum( A Length )
• Count( number of branches “+B”)
• Mean( A diameter )

Branch (per year)

• Sum( leaf area )
• Sum( GU Lengths )
• Count ( GUs )
• Count( FL, VG, LB, EX )
• Angle of the branch
• Height of the branching internode (or its identity/node number)

GU (per year and branching order: A, B, C, D)

• Sum( Leaf area )
• Sum( Length )
• Count( number of GUs )
• Count( FL, VG, LB, EX )

Notebook for Reproducibility