update docker file to work in mac arm machines (#927)

.github/workflows/docker-image.yml

@@ -48,7 +48,7 @@ jobs:
         uses: docker/build-push-action@v4
         with:
           context: .
-          platforms: linux/amd64
+          platforms: linux/amd64, linux/arm64
           build-args: |
             RUBY_VERSION=2.7.8
           push: true

Dockerfile

@@ -1,8 +1,7 @@
 # Make sure it matches the Ruby version in .ruby-version and Gemfile
-ARG RUBY_VERSION=3.2.0
+ARG RUBY_VERSION=2.7.8
 FROM ruby:${RUBY_VERSION}-alpine
 
-# Install libvips for Active Storage preview support
 RUN apk add --no-cache build-base \
                        libxml2-dev \
                        libxslt-dev \
@@ -14,40 +13,66 @@ RUN apk add --no-cache build-base \
                        bash \
                        docker \
                        docker-compose \
+                       cmake \
+                       g++ \
+                       make \
+                       libc6-compat \
+                       libstdc++ \
+                       ruby-dev \
+                       libffi-dev \
+                       openssl-dev \
     && mkdir /node_modules
 
+# Install Node.js 18.x and npm
+RUN curl -fsSL https://deb.nodesource.com/setup_18.x | bash - && \
+    apt-get update && \
+    apt-get install -y nodejs && \
+    rm -rf /var/lib/apt/lists/*
+
+# Install yarn
+RUN npm install -g yarn
+
 # Rails app lives here
 WORKDIR /app
 
 # Set production environment
 ARG RAILS_ENV="production"
 ARG BUNDLE_WITHOUT="development test"
-
 ENV RAILS_LOG_TO_STDOUT="1" \
     RAILS_SERVE_STATIC_FILES="true" \
     RAILS_ENV="${RAILS_ENV}" \
     BUNDLE_PATH=/usr/local/bundle \
     BUNDLE_WITHOUT="${BUNDLE_WITHOUT}"
 
-RUN gem update --system 3.4.22 # the 3.4.22 can be removed if we support Ruby version > 3.0
+# Update RubyGems and Bundler
+RUN gem update --system 3.4.22 && \
+    gem install bundler:2.4.22
 
-COPY . .
+# Copy Gemfile and Gemfile.lock first
+COPY Gemfile Gemfile.lock ./
 
-RUN bundle install
-RUN yarn install && yarn build
+# Install gems
+RUN bundle config set --local build.nokogiri --use-system-libraries && \
+    bundle install --jobs 4 --retry 3
 
+# Copy the rest of the application
+COPY . .
 
+# Install yarn packages and build
+RUN yarn install && yarn build
 
-RUN cp config/bioportal_config_env.rb.sample config/bioportal_config_production.rb
-RUN cp config/bioportal_config_env.rb.sample config/bioportal_config_development.rb
-RUN cp config/database.yml.sample config/database.yml
+# Copy configuration files
+RUN cp config/bioportal_config_env.rb.sample config/bioportal_config_production.rb && \
+    cp config/bioportal_config_env.rb.sample config/bioportal_config_development.rb && \
+    cp config/database.yml.sample config/database.yml
 
 # Precompile bootsnap code for faster boot times
 RUN bundle exec bootsnap precompile --gemfile app/ lib/
 
+# Precompile assets
 RUN SECRET_KEY_BASE_DUMMY="1" ./bin/rails assets:precompile
 
 ENV BINDING="0.0.0.0"
 EXPOSE 3000
 
-CMD ["bash"]
+CMD ["bash"]

Gemfile.lock

@@ -324,6 +324,8 @@ GEM
     netrc (0.11.0)
     newrelic_rpm (9.14.0)
     nio4r (2.7.3)
+    nokogiri (1.15.6-aarch64-linux)
+      racc (~> 1.4)
     nokogiri (1.15.6-x86_64-linux)
       racc (~> 1.4)
     oauth2 (2.0.9)
@@ -560,6 +562,7 @@ GEM
     zeitwerk (2.6.18)
 
 PLATFORMS
+  aarch64-linux-musl
   x86_64-linux
   x86_64-linux-musl
 

docker-compose.yml

@@ -38,14 +38,14 @@ services:
     environment:
       MYSQL_ROOT_PASSWORD: root
     healthcheck:
-      test: ["CMD", "mysqladmin", "ping", "-h", "localhost"]
+      test: [ "CMD", "mysqladmin", "ping", "-h", "localhost" ]
       timeout: 5s
       retries: 3
 
   cache:
     image: memcached:latest
     restart: unless-stopped
-    command: ["-m", "1024"]
+    command: [ "-m", "1024" ]
     networks:
       - default
     ports:

mise.toml

@@ -0,0 +1,2 @@
+[tools]
+ruby = "2.7.8"