Nextflow Github Actions debug #14

	name: Go

	on:
	push:

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- name: Set up Go 1.x
	uses: actions/setup-go@v2
	with:
	go-version: 1.21

	- name: Check out code
	uses: actions/checkout@v2

	- name: Cache Funnel binary
	uses: actions/cache@v2
	id: cache-funnel
	with:
	path: funnel
	key: ${{ runner.os }}-funnel

	- name: Build Funnel (if cache does not exist)
	if: steps.cache-funnel.outputs.cache-hit != 'true'
	run: make build

	- name: Restore Funnel from cache (if exists)
	if: steps.cache-funnel.outputs.cache-hit == 'true'
	uses: actions/cache@v2
	with:
	path: funnel
	key: ${{ runner.os }}-funnel

	- name: Store Funnel
	uses: actions/upload-artifact@v2
	with:
	name: funnelBin
	path: funnel

	nextflow:
	runs-on: ubuntu-latest
	needs: build
	steps:
	- name: Download Funnel
	uses: actions/download-artifact@v2
	with:
	name: funnelBin
	path: funnel

	- name: Start Funnel
	working-directory:
	run: \|
	cd funnel/
	chmod +x ./funnel
	./funnel server --LocalStorage.AllowedDirs $HOME run &

	- name: Install Nextflow
	run: \|
	cd ..
	git clone https://github.com/ohsu-comp-bio/nextflow -b feature/test-1.1-bin
	cd nextflow
	make compile

	- name: Install nf-canary and GA4GH-TES plugin
	run: \|
	cd ..
	git clone https://github.com/ohsu-comp-bio/nf-canary
	cd nf-canary
	cat <<EOF >> nextflow.config
	plugins {
	id 'nf-ga4gh'
	}
	process.executor = 'tes'
	tes.endpoint = 'http://localhost:8000'
	EOF

	- name: Setup tmate session
	uses: mxschmitt/action-tmate@v3

	- name: Run nf-canary tests
	run: \|
	../nextflow/launch.sh run main.nf

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