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enhance: use workspace file revisions to avoid clobbering the database #437

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Feb 24, 2025
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enhance: use workspace file revisions to avoid clobbering the database #437

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14 changes: 7 additions & 7 deletions database/go.mod
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Original file line number Diff line number Diff line change
Expand Up @@ -3,20 +3,20 @@ module obot-platform/database
go 1.23.3

require (
github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510
github.com/gptscript-ai/go-gptscript v0.9.6-0.20250204133419-744b25b84a61
github.com/gptscript-ai/go-gptscript v0.9.6-0.20250222170845-eee4337500a6
github.com/ncruces/go-sqlite3 v0.20.3
)

require (
github.com/getkin/kin-openapi v0.124.0 // indirect
github.com/go-openapi/jsonpointer v0.20.2 // indirect
github.com/go-openapi/swag v0.22.8 // indirect
github.com/invopop/yaml v0.2.0 // indirect
github.com/getkin/kin-openapi v0.129.0 // indirect
github.com/go-openapi/jsonpointer v0.21.0 // indirect
github.com/go-openapi/swag v0.23.0 // indirect
github.com/josharian/intern v1.0.0 // indirect
github.com/mailru/easyjson v0.7.7 // indirect
github.com/mailru/easyjson v0.9.0 // indirect
github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826 // indirect
github.com/ncruces/julianday v1.0.0 // indirect
github.com/oasdiff/yaml v0.0.0-20241210131133-6b86fb107d80 // indirect
github.com/oasdiff/yaml3 v0.0.0-20241210130736-a94c01f36349 // indirect
github.com/perimeterx/marshmallow v1.1.5 // indirect
github.com/tetratelabs/wazero v1.8.2 // indirect
golang.org/x/sys v0.27.0 // indirect
Expand Down
33 changes: 16 additions & 17 deletions database/go.sum
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Original file line number Diff line number Diff line change
@@ -1,41 +1,41 @@
github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/getkin/kin-openapi v0.124.0 h1:VSFNMB9C9rTKBnQ/fpyDU8ytMTr4dWI9QovSKj9kz/M=
github.com/getkin/kin-openapi v0.124.0/go.mod h1:wb1aSZA/iWmorQP9KTAS/phLj/t17B5jT7+fS8ed9NM=
github.com/go-openapi/jsonpointer v0.20.2 h1:mQc3nmndL8ZBzStEo3JYF8wzmeWffDH4VbXz58sAx6Q=
github.com/go-openapi/jsonpointer v0.20.2/go.mod h1:bHen+N0u1KEO3YlmqOjTT9Adn1RfD91Ar825/PuiRVs=
github.com/go-openapi/swag v0.22.8 h1:/9RjDSQ0vbFR+NyjGMkFTsA1IA0fmhKSThmfGZjicbw=
github.com/go-openapi/swag v0.22.8/go.mod h1:6QT22icPLEqAM/z/TChgb4WAveCHF92+2gF0CNjHpPI=
github.com/getkin/kin-openapi v0.129.0 h1:QGYTNcmyP5X0AtFQ2Dkou9DGBJsUETeLH9rFrJXZh30=
github.com/getkin/kin-openapi v0.129.0/go.mod h1:gmWI+b/J45xqpyK5wJmRRZse5wefA5H0RDMK46kLUtI=
github.com/go-openapi/jsonpointer v0.21.0 h1:YgdVicSA9vH5RiHs9TZW5oyafXZFc6+2Vc1rr/O9oNQ=
github.com/go-openapi/jsonpointer v0.21.0/go.mod h1:IUyH9l/+uyhIYQ/PXVA41Rexl+kOkAPDdXEYns6fzUY=
github.com/go-openapi/swag v0.23.0 h1:vsEVJDUo2hPJ2tu0/Xc+4noaxyEffXNIs3cOULZ+GrE=
github.com/go-openapi/swag v0.23.0/go.mod h1:esZ8ITTYEsH1V2trKHjAN8Ai7xHb8RV+YSZ577vPjgQ=
github.com/go-test/deep v1.0.8 h1:TDsG77qcSprGbC6vTN8OuXp5g+J+b5Pcguhf7Zt61VM=
github.com/go-test/deep v1.0.8/go.mod h1:5C2ZWiW0ErCdrYzpqxLbTX7MG14M9iiw8DgHncVwcsE=
github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510 h1:El6M4kTTCOh6aBiKaUGG7oYTSPP8MxqL4YI3kZKwcP4=
github.com/google/shlex v0.0.0-20191202100458-e7afc7fbc510/go.mod h1:pupxD2MaaD3pAXIBCelhxNneeOaAeabZDe5s4K6zSpQ=
github.com/gptscript-ai/go-gptscript v0.9.6-0.20250204133419-744b25b84a61 h1:QxLjsLOYlsVLPwuRkP0Q8EcAoZT1s8vU2ZBSX0+R6CI=
github.com/gptscript-ai/go-gptscript v0.9.6-0.20250204133419-744b25b84a61/go.mod h1:/FVuLwhz+sIfsWUgUHWKi32qT0i6+IXlUlzs70KKt/Q=
github.com/invopop/yaml v0.2.0 h1:7zky/qH+O0DwAyoobXUqvVBwgBFRxKoQ/3FjcVpjTMY=
github.com/invopop/yaml v0.2.0/go.mod h1:2XuRLgs/ouIrW3XNzuNj7J3Nvu/Dig5MXvbCEdiBN3Q=
github.com/gptscript-ai/go-gptscript v0.9.6-0.20250222170845-eee4337500a6 h1:vsZ09cWfNWUXT6AOVQc1GpfEdIxcLusUs6Hgo9IgAKs=
github.com/gptscript-ai/go-gptscript v0.9.6-0.20250222170845-eee4337500a6/go.mod h1:QvGPZoRuAiA8P5EzPI05kTrs+LZ0ipHywUGsKruSknw=
github.com/josharian/intern v1.0.0 h1:vlS4z54oSdjm0bgjRigI+G1HpF+tI+9rE5LLzOg8HmY=
github.com/josharian/intern v1.0.0/go.mod h1:5DoeVV0s6jJacbCEi61lwdGj/aVlrQvzHFFd8Hwg//Y=
github.com/kr/pretty v0.3.1 h1:flRD4NNwYAUpkphVc1HcthR4KEIFJ65n8Mw5qdRn3LE=
github.com/kr/pretty v0.3.1/go.mod h1:hoEshYVHaxMs3cyo3Yncou5ZscifuDolrwPKZanG3xk=
github.com/kr/text v0.2.0 h1:5Nx0Ya0ZqY2ygV366QzturHI13Jq95ApcVaJBhpS+AY=
github.com/kr/text v0.2.0/go.mod h1:eLer722TekiGuMkidMxC/pM04lWEeraHUUmBw8l2grE=
github.com/mailru/easyjson v0.7.7 h1:UGYAvKxe3sBsEDzO8ZeWOSlIQfWFlxbzLZe7hwFURr0=
github.com/mailru/easyjson v0.7.7/go.mod h1:xzfreul335JAWq5oZzymOObrkdz5UnU4kGfJJLY9Nlc=
github.com/mailru/easyjson v0.9.0 h1:PrnmzHw7262yW8sTBwxi1PdJA3Iw/EKBa8psRf7d9a4=
github.com/mailru/easyjson v0.9.0/go.mod h1:1+xMtQp2MRNVL/V1bOzuP3aP8VNwRW55fQUto+XFtTU=
github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826 h1:RWengNIwukTxcDr9M+97sNutRR1RKhG96O6jWumTTnw=
github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826/go.mod h1:TaXosZuwdSHYgviHp1DAtfrULt5eUgsSMsZf+YrPgl8=
github.com/ncruces/go-sqlite3 v0.20.3 h1:+4G4uEqOeusF0yRuQVUl9fuoEebUolwQSnBUjYBLYIw=
github.com/ncruces/go-sqlite3 v0.20.3/go.mod h1:ojLIAB243gtz68Eo283Ps+k9PyR3dvzS+9/RgId4+AA=
github.com/ncruces/julianday v1.0.0 h1:fH0OKwa7NWvniGQtxdJRxAgkBMolni2BjDHaWTxqt7M=
github.com/ncruces/julianday v1.0.0/go.mod h1:Dusn2KvZrrovOMJuOt0TNXL6tB7U2E8kvza5fFc9G7g=
github.com/oasdiff/yaml v0.0.0-20241210131133-6b86fb107d80 h1:nZspmSkneBbtxU9TopEAE0CY+SBJLxO8LPUlw2vG4pU=
github.com/oasdiff/yaml v0.0.0-20241210131133-6b86fb107d80/go.mod h1:7tFDb+Y51LcDpn26GccuUgQXUk6t0CXZsivKjyimYX8=
github.com/oasdiff/yaml3 v0.0.0-20241210130736-a94c01f36349 h1:t05Ww3DxZutOqbMN+7OIuqDwXbhl32HiZGpLy26BAPc=
github.com/oasdiff/yaml3 v0.0.0-20241210130736-a94c01f36349/go.mod h1:y5+oSEHCPT/DGrS++Wc/479ERge0zTFxaF8PbGKcg2o=
github.com/perimeterx/marshmallow v1.1.5 h1:a2LALqQ1BlHM8PZblsDdidgv1mWi1DgC2UmX50IvK2s=
github.com/perimeterx/marshmallow v1.1.5/go.mod h1:dsXbUu8CRzfYP5a87xpp0xq9S3u0Vchtcl8we9tYaXw=
github.com/pmezard/go-difflib v1.0.0 h1:4DBwDE0NGyQoBHbLQYPwSUPoCMWR5BEzIk/f1lZbAQM=
github.com/pmezard/go-difflib v1.0.0/go.mod h1:iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4=
github.com/rogpeppe/go-internal v1.12.0 h1:exVL4IDcn6na9z1rAb56Vxr+CgyK3nn3O+epU5NdKM8=
github.com/rogpeppe/go-internal v1.12.0/go.mod h1:E+RYuTGaKKdloAfM02xzb0FW3Paa99yedzYV+kq4uf4=
github.com/stretchr/testify v1.8.4 h1:CcVxjf3Q8PM0mHUKJCdn+eZZtm5yQwehR5yeSVQQcUk=
github.com/stretchr/testify v1.8.4/go.mod h1:sz/lmYIOXD/1dqDmKjjqLyZ2RngseejIcXlSw2iwfAo=
github.com/stretchr/testify v1.10.0 h1:Xv5erBjTwe/5IxqUQTdXv5kgmIvbHo3QQyRwhJsOfJA=
github.com/stretchr/testify v1.10.0/go.mod h1:r2ic/lqez/lEtzL7wO/rwa5dbSLXVDPFyf8C91i36aY=
github.com/tetratelabs/wazero v1.8.2 h1:yIgLR/b2bN31bjxwXHD8a3d+BogigR952csSDdLYEv4=
github.com/tetratelabs/wazero v1.8.2/go.mod h1:yAI0XTsMBhREkM/YDAK/zNou3GoiAce1P6+rp/wQhjs=
github.com/ugorji/go/codec v1.2.7 h1:YPXUKf7fYbp/y8xloBqZOw2qaVggbfwMlI8WM3wZUJ0=
Expand All @@ -47,6 +47,5 @@ golang.org/x/text v0.20.0/go.mod h1:D4IsuqiFMhST5bX19pQ9ikHC2GsaKyk/oF+pn3ducp4=
gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=
gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntNwaWcugrBjAiHlqqRiVk=
gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c/go.mod h1:JHkPIbrfpd72SG/EVd6muEfDQjcINNoR0C8j2r3qZ4Q=
gopkg.in/yaml.v3 v3.0.0/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA=
gopkg.in/yaml.v3 v3.0.1/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM=
51 changes: 43 additions & 8 deletions database/main.go
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ import (
"errors"
"fmt"
"os"
"slices"

"obot-platform/database/pkg/cmd"

Expand All @@ -32,15 +33,17 @@ func main() {
defer g.Close()

var (
ctx = context.Background()
dbFileName = "acorn.db"
dbWorkspacePath = "/databases/" + dbFileName
ctx = context.Background()
dbFileName = "acorn.db"
dbWorkspacePath = "/databases/" + dbFileName
revisionID string = "-1"
initialDBData []byte
)

// Read the database file from the workspace
initialDBData, err := g.ReadFileInWorkspace(ctx, dbWorkspacePath, gptscript.ReadFileInWorkspaceOptions{
workspaceDB, err := g.ReadFileWithRevisionInWorkspace(ctx, dbWorkspacePath, gptscript.ReadFileInWorkspaceOptions{
WorkspaceID: workspaceID,
})

var notFoundErr *gptscript.NotFoundInWorkspaceError
if err != nil && !errors.As(err, &notFoundErr) {
fmt.Printf("Error reading DB file: %v\n", err)
Expand All @@ -57,11 +60,15 @@ func main() {
defer os.Remove(dbFile.Name())

// Write the data to the temporary file
if initialDBData != nil {
if workspaceDB != nil && workspaceDB.Content != nil {
initialDBData = workspaceDB.Content
if err := os.WriteFile(dbFile.Name(), initialDBData, 0644); err != nil {
fmt.Printf("Error writing to temp file: %v\n", err)
os.Exit(1)
}
if workspaceDB.RevisionID != "" {
revisionID = workspaceDB.RevisionID
}
}

// Run the requested command
Expand All @@ -74,7 +81,7 @@ func main() {
case "runDatabaseSQL":
result, err = cmd.RunDatabaseCommand(ctx, dbFile, os.Getenv("SQL"), "-header")
if err == nil {
err = saveWorkspaceDB(ctx, g, dbWorkspacePath, dbFile, initialDBData)
err = saveWorkspaceDB(ctx, g, dbWorkspacePath, revisionID, dbFile, initialDBData)
}
case "databaseContext":
result, err = cmd.DatabaseContext(ctx, dbFile)
Expand All @@ -95,6 +102,7 @@ func saveWorkspaceDB(
ctx context.Context,
g *gptscript.GPTScript,
dbWorkspacePath string,
revisionID string,
dbFile *os.File,
initialDBData []byte,
) error {
Expand All @@ -108,11 +116,38 @@ func saveWorkspaceDB(
}

if err := g.WriteFileInWorkspace(ctx, dbWorkspacePath, updatedDBData, gptscript.WriteFileInWorkspaceOptions{
WorkspaceID: workspaceID,
WorkspaceID: workspaceID,
CreateRevision: &([]bool{true}[0]),
LatestRevisionID: revisionID,
}); err != nil {
return fmt.Errorf("Error writing updated DB file to workspace: %v", err)
}

// Delete old revisions after successfully writing the new revision
revisions, err := g.ListRevisionsForFileInWorkspace(ctx, dbWorkspacePath, gptscript.ListRevisionsForFileInWorkspaceOptions{
WorkspaceID: workspaceID,
})
if err != nil {
fmt.Fprintf(os.Stderr, "Error listing revisions: %v\n", err)
return nil
}

lastRevisionIndex := slices.IndexFunc(revisions, func(rev gptscript.FileInfo) bool {
return rev.RevisionID == revisionID
})

Comment on lines +135 to +138
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Revisions should come out in order.

if lastRevisionIndex < 0 {
return nil
}

for _, rev := range revisions[:lastRevisionIndex+1] {
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This seems to be delete ALL revisions. Is that the intention?

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Iiuc, this drops all revisions up-to and including the previous revision (not the one we just created).

if err := g.DeleteRevisionForFileInWorkspace(ctx, dbWorkspacePath, rev.RevisionID, gptscript.DeleteRevisionForFileInWorkspaceOptions{
WorkspaceID: workspaceID,
}); err != nil {
fmt.Fprintf(os.Stderr, "Error deleting revision %s: %v\n", rev.RevisionID, err)
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Same here

}
}

return nil
}

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