Update to schemas pr-262

.openapi-generator/FILES

@@ -57,6 +57,7 @@ docs/PatientCreateRequest.md
 docs/PatientCreateResponse.md
 docs/PatientId.md
 docs/PatientResourceName.md
+docs/ProgrammingLanguage.md
 docs/ResourceSource.md
 docs/ResponsePageMetadata.md
 docs/ResponsePageMetadataLinks.md
@@ -167,6 +168,7 @@ nlpsandbox/model/patient_create_request.py
 nlpsandbox/model/patient_create_response.py
 nlpsandbox/model/patient_id.py
 nlpsandbox/model/patient_resource_name.py
+nlpsandbox/model/programming_language.py
 nlpsandbox/model/resource_source.py
 nlpsandbox/model/response_page_metadata.py
 nlpsandbox/model/response_page_metadata_links.py
@@ -199,5 +201,101 @@ nlpsandbox/model/tool_dependencies.py
 nlpsandbox/model/tool_type.py
 nlpsandbox/model_utils.py
 nlpsandbox/models/__init__.py
-nlpsandbox/rest.py
 test/__init__.py
+test/test_annotation.py
+test/test_annotation_api.py
+test/test_annotation_create_request.py
+test/test_annotation_create_response.py
+test/test_annotation_id.py
+test/test_annotation_name.py
+test/test_annotation_set.py
+test/test_annotation_source.py
+test/test_annotation_store.py
+test/test_annotation_store_api.py
+test/test_annotation_store_create_response.py
+test/test_annotation_store_id.py
+test/test_annotation_store_name.py
+test/test_dataset.py
+test/test_dataset_api.py
+test/test_dataset_create_response.py
+test/test_dataset_id.py
+test/test_dataset_name.py
+test/test_date_offset_config.py
+test/test_deidentification_step.py
+test/test_deidentified_note_api.py
+test/test_deidentify_request.py
+test/test_deidentify_response.py
+test/test_error.py
+test/test_fhir_store.py
+test/test_fhir_store_api.py
+test/test_fhir_store_create_response.py
+test/test_fhir_store_id.py
+test/test_fhir_store_name.py
+test/test_health_check.py
+test/test_health_check_api.py
+test/test_license.py
+test/test_masking_char_config.py
+test/test_note.py
+test/test_note_api.py
+test/test_note_create_request.py
+test/test_note_create_response.py
+test/test_note_id.py
+test/test_note_resource_name.py
+test/test_page_limit.py
+test/test_page_of_annotation_stores.py
+test/test_page_of_annotation_stores_all_of.py
+test/test_page_of_annotations.py
+test/test_page_of_annotations_all_of.py
+test/test_page_of_datasets.py
+test/test_page_of_datasets_all_of.py
+test/test_page_of_fhir_stores.py
+test/test_page_of_fhir_stores_all_of.py
+test/test_page_of_notes.py
+test/test_page_of_notes_all_of.py
+test/test_page_of_patients.py
+test/test_page_of_patients_all_of.py
+test/test_page_offset.py
+test/test_patient.py
+test/test_patient_api.py
+test/test_patient_create_request.py
+test/test_patient_create_response.py
+test/test_patient_id.py
+test/test_patient_resource_name.py
+test/test_programming_language.py
+test/test_resource_source.py
+test/test_response_page_metadata.py
+test/test_response_page_metadata_links.py
+test/test_text_annotation.py
+test/test_text_contact_annotation.py
+test/test_text_contact_annotation_all_of.py
+test/test_text_contact_annotation_api.py
+test/test_text_contact_annotation_request.py
+test/test_text_contact_annotation_response.py
+test/test_text_covid_symptom_annotation.py
+test/test_text_covid_symptom_annotation_all_of.py
+test/test_text_covid_symptom_annotation_api.py
+test/test_text_covid_symptom_annotation_request.py
+test/test_text_covid_symptom_annotation_response.py
+test/test_text_date_annotation.py
+test/test_text_date_annotation_all_of.py
+test/test_text_date_annotation_api.py
+test/test_text_date_annotation_request.py
+test/test_text_date_annotation_response.py
+test/test_text_id_annotation.py
+test/test_text_id_annotation_all_of.py
+test/test_text_id_annotation_api.py
+test/test_text_id_annotation_request.py
+test/test_text_id_annotation_response.py
+test/test_text_location_annotation.py
+test/test_text_location_annotation_all_of.py
+test/test_text_location_annotation_api.py
+test/test_text_location_annotation_request.py
+test/test_text_location_annotation_response.py
+test/test_text_person_name_annotation.py
+test/test_text_person_name_annotation_api.py
+test/test_text_person_name_annotation_request.py
+test/test_text_person_name_annotation_response.py
+test/test_tool.py
+test/test_tool_api.py
+test/test_tool_dependencies.py
+test/test_tool_type.py

.openapi-generator/VERSION

@@ -1 +1 @@
-5.1.1
+5.3.0

docs/Annotation.md

@@ -13,6 +13,7 @@ Name | Type | Description | Notes
 **text_id_annotations** | [**[TextIdAnnotation]**](TextIdAnnotation.md) | ID annotations in a text | [optional] 
 **text_contact_annotations** | [**[TextContactAnnotation]**](TextContactAnnotation.md) | Contact annotations in a text | [optional] 
 **text_covid_symptom_annotations** | [**[TextCovidSymptomAnnotation]**](TextCovidSymptomAnnotation.md) | COVID symptom annotations in a text | [optional] 
+**any string name** | **bool, date, datetime, dict, float, int, list, str, none_type** | any string name can be used but the value must be the correct type | [optional]
 
 [[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)
 

docs/AnnotationApi.md

@@ -19,6 +19,8 @@ Create an annotation
 
 ### Example
 
+* Api Key Authentication (ApiKeyAuth):
+
 ```python
 import time
 import nlpsandbox
@@ -36,9 +38,19 @@ configuration = nlpsandbox.Configuration(
     host = "http://example.com/api/v1"
 )
 
+# The client must configure the authentication and authorization parameters
+# in accordance with the API server security policy.
+# Examples for each auth method are provided below, use the example that
+# satisfies your auth use case.
+
+# Configure API key authorization: ApiKeyAuth
+configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'
+
+# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
+# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'
 
 # Enter a context with an instance of the API client
-with nlpsandbox.ApiClient() as api_client:
+with nlpsandbox.ApiClient(configuration) as api_client:
     # Create an instance of the API class
     api_instance = annotation_api.AnnotationApi(api_client)
     dataset_id = DatasetId("awesome-dataset") # DatasetId | The ID of the dataset
@@ -104,7 +116,7 @@ Name | Type | Description  | Notes
 
 ### Authorization
 
-No authorization required
+[ApiKeyAuth](../README.md#ApiKeyAuth)
 
 ### HTTP request headers
 
@@ -113,6 +125,7 @@ No authorization required
 
 
 ### HTTP response details
+
 | Status code | Description | Response headers |
 |-------------|-------------|------------------|
 **201** | Success |  -  |
@@ -131,6 +144,8 @@ Deletes the annotation specified
 
 ### Example
 
+* Api Key Authentication (ApiKeyAuth):
+
 ```python
 import time
 import nlpsandbox
@@ -146,9 +161,19 @@ configuration = nlpsandbox.Configuration(
     host = "http://example.com/api/v1"
 )
 
+# The client must configure the authentication and authorization parameters
+# in accordance with the API server security policy.
+# Examples for each auth method are provided below, use the example that
+# satisfies your auth use case.
+
+# Configure API key authorization: ApiKeyAuth
+configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'
+
+# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
+# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'
 
 # Enter a context with an instance of the API client
-with nlpsandbox.ApiClient() as api_client:
+with nlpsandbox.ApiClient(configuration) as api_client:
     # Create an instance of the API class
     api_instance = annotation_api.AnnotationApi(api_client)
     dataset_id = DatasetId("awesome-dataset") # DatasetId | The ID of the dataset
@@ -179,7 +204,7 @@ Name | Type | Description  | Notes
 
 ### Authorization
 
-No authorization required
+[ApiKeyAuth](../README.md#ApiKeyAuth)
 
 ### HTTP request headers
 
@@ -188,6 +213,7 @@ No authorization required
 
 
 ### HTTP response details
+
 | Status code | Description | Response headers |
 |-------------|-------------|------------------|
 **200** | Success |  -  |
@@ -205,6 +231,8 @@ Returns the annotation specified
 
 ### Example
 
+* Api Key Authentication (ApiKeyAuth):
+
 ```python
 import time
 import nlpsandbox
@@ -221,9 +249,19 @@ configuration = nlpsandbox.Configuration(
     host = "http://example.com/api/v1"
 )
 
+# The client must configure the authentication and authorization parameters
+# in accordance with the API server security policy.
+# Examples for each auth method are provided below, use the example that
+# satisfies your auth use case.
+
+# Configure API key authorization: ApiKeyAuth
+configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'
+
+# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
+# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'
 
 # Enter a context with an instance of the API client
-with nlpsandbox.ApiClient() as api_client:
+with nlpsandbox.ApiClient(configuration) as api_client:
     # Create an instance of the API class
     api_instance = annotation_api.AnnotationApi(api_client)
     dataset_id = DatasetId("awesome-dataset") # DatasetId | The ID of the dataset
@@ -254,7 +292,7 @@ Name | Type | Description  | Notes
 
 ### Authorization
 
-No authorization required
+[ApiKeyAuth](../README.md#ApiKeyAuth)
 
 ### HTTP request headers
 
@@ -263,6 +301,7 @@ No authorization required
 
 
 ### HTTP response details
+
 | Status code | Description | Response headers |
 |-------------|-------------|------------------|
 **200** | Success |  -  |
@@ -280,6 +319,8 @@ Returns the annotations in an annotation store
 
 ### Example
 
+* Api Key Authentication (ApiKeyAuth):
+
 ```python
 import time
 import nlpsandbox
@@ -297,9 +338,19 @@ configuration = nlpsandbox.Configuration(
     host = "http://example.com/api/v1"
 )
 
+# The client must configure the authentication and authorization parameters
+# in accordance with the API server security policy.
+# Examples for each auth method are provided below, use the example that
+# satisfies your auth use case.
+
+# Configure API key authorization: ApiKeyAuth
+configuration.api_key['ApiKeyAuth'] = 'YOUR_API_KEY'
+
+# Uncomment below to setup prefix (e.g. Bearer) for API key, if needed
+# configuration.api_key_prefix['ApiKeyAuth'] = 'Bearer'
 
 # Enter a context with an instance of the API client
-with nlpsandbox.ApiClient() as api_client:
+with nlpsandbox.ApiClient(configuration) as api_client:
     # Create an instance of the API class
     api_instance = annotation_api.AnnotationApi(api_client)
     dataset_id = DatasetId("awesome-dataset") # DatasetId | The ID of the dataset
@@ -341,7 +392,7 @@ Name | Type | Description  | Notes
 
 ### Authorization
 
-No authorization required
+[ApiKeyAuth](../README.md#ApiKeyAuth)
 
 ### HTTP request headers
 
@@ -350,6 +401,7 @@ No authorization required
 
 
 ### HTTP response details
+
 | Status code | Description | Response headers |
 |-------------|-------------|------------------|
 **200** | Success |  -  |

docs/AnnotationCreateRequest.md

@@ -12,6 +12,7 @@ Name | Type | Description | Notes
 **text_id_annotations** | [**[TextIdAnnotation]**](TextIdAnnotation.md) | ID annotations in a text | [optional] 
 **text_contact_annotations** | [**[TextContactAnnotation]**](TextContactAnnotation.md) | Contact annotations in a text | [optional] 
 **text_covid_symptom_annotations** | [**[TextCovidSymptomAnnotation]**](TextCovidSymptomAnnotation.md) | COVID symptom annotations in a text | [optional] 
+**any string name** | **bool, date, datetime, dict, float, int, list, str, none_type** | any string name can be used but the value must be the correct type | [optional]
 
 [[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)
 

docs/AnnotationCreateResponse.md

@@ -6,6 +6,7 @@ The reference to the annotation created
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
 **name** | [**AnnotationName**](AnnotationName.md) |  | 
+**any string name** | **bool, date, datetime, dict, float, int, list, str, none_type** | any string name can be used but the value must be the correct type | [optional]
 
 [[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)
 

docs/AnnotationSet.md

@@ -10,6 +10,7 @@ Name | Type | Description | Notes
 **text_location_annotations** | [**[TextLocationAnnotation]**](TextLocationAnnotation.md) | Location annotations in a text | 
 **text_id_annotations** | [**[TextIdAnnotation]**](TextIdAnnotation.md) | ID annotations in a text | 
 **text_contact_annotations** | [**[TextContactAnnotation]**](TextContactAnnotation.md) | Contact annotations in a text | 
+**any string name** | **bool, date, datetime, dict, float, int, list, str, none_type** | any string name can be used but the value must be the correct type | [optional]
 
 [[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)
 

docs/AnnotationSource.md

@@ -6,6 +6,7 @@ The source of an annotation record
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
 **resource_source** | [**ResourceSource**](ResourceSource.md) |  | 
+**any string name** | **bool, date, datetime, dict, float, int, list, str, none_type** | any string name can be used but the value must be the correct type | [optional]
 
 [[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)
 

docs/AnnotationStore.md

@@ -6,6 +6,7 @@ An annotation store
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
 **name** | [**AnnotationStoreName**](AnnotationStoreName.md) |  | 
+**any string name** | **bool, date, datetime, dict, float, int, list, str, none_type** | any string name can be used but the value must be the correct type | [optional]
 
 [[Back to Model list]](../README.md#documentation-for-models) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to README]](../README.md)