now with https

nih-cfde · Jul 8, 2022 · 8bce55b · 8bce55b
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diff --git a/drs-test.R b/drs-test.R
@@ -1,6 +1,7 @@
 library(dplyr)
 library(tidyr)
-library(ggplot2)
+
+# test drs
 
 df <- read.csv("ncpi_manifest.csv") 
 head(df)
@@ -18,3 +19,24 @@ colnames(drs) <- NULL
 drs
 
 write.table(drs, "drs-test.sh", row.names = F, quote = FALSE, sep = " ")
+
+# open terminal and run. see README
+
+## test http
+
+df3 <- read.csv("ncpi_manifest_1.csv")
+
+df4 <- df3 %>%
+  filter(grepl("http", drs_uri))
+
+https  <- df4 %>%
+  sample_n(10, replace = FALSE) %>%
+  mutate(http = paste('browseURL("', drs_uri, '")', sep = "")) %>%
+  select(http)
+
+colnames(https) <- NULL
+https
+
+write.table(https, "http-test.R", row.names = F, quote = FALSE, sep = " ")
+
+# open terminal and run. see README
diff --git a/http-test.R b/http-test.R
@@ -0,0 +1,10 @@
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_PRISM001_MCF7_6H_L11_TL-AA09_1.25uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ASG002_SH4_24H_I10_orciprenaline_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ASG002_HEC108_24H_N12_CV-1808_0.12uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_MOAR010_22RV1_24H_H13_DUP-697_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ASG002_ZR751_24H_N12_CV-1808_0.12uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ISO001_MCF10A.WTHP_24H_K24_crizotinib_0.04uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_LJP007_HME1_24H_L21_WZ-4002_1.11uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_LPROT002_NPC.TAK_6H_O06_tacrolimus_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_CPC004_VCAP_24H_A23_salsolinol_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_MOAR010_BEN_24H_J07_paraxanthine_10uM.tsv.gz")
diff --git a/http-test.sh b/http-test.sh
@@ -0,0 +1,10 @@
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_PRISM001_MCF7_6H_L11_TL-AA09_1.25uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ASG002_SH4_24H_I10_orciprenaline_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ASG002_HEC108_24H_N12_CV-1808_0.12uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_MOAR010_22RV1_24H_H13_DUP-697_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ASG002_ZR751_24H_N12_CV-1808_0.12uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_ISO001_MCF10A.WTHP_24H_K24_crizotinib_0.04uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_LJP007_HME1_24H_L21_WZ-4002_1.11uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_LPROT002_NPC.TAK_6H_O06_tacrolimus_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_CPC004_VCAP_24H_A23_salsolinol_10uM.tsv.gz")
+browseURL("https://lincs-dcic.s3.amazonaws.com/LINCS-data-2020/L1000/compound/L1000_LINCS_DCIC_MOAR010_BEN_24H_J07_paraxanthine_10uM.tsv.gz")