Directory with scripts for processing at CERN added

.gitignore

@@ -35,4 +35,10 @@
 *.DS_Store
 
 # build directory
-build/*
+build/*
+
+# processing
+processing/input/*
+processing/output/*
+processing/log/*
+processin/voms_proxy.txt

jetAna.cxx

@@ -45,7 +45,8 @@ int main(int argc, char const *argv[]) {
     TString pfBranchName{};
     TString oFileName{};
     TString JECFileName;
-    TString path2JEC = "/Users/gnigmat/work/cms/soft/jetAnalysis";
+    //TString path2JEC = "/Users/gnigmat/work/cms/soft/jetAnalysis";
+    TString path2JEC = "../";
     if ( isPbPb ) {
         inFileName = "../../../data/HiForestAOD_PbPb_sim.list";
         //inFileName = "../../../data/HiForestAOD_PbPb_exp.list";

processing/run_jetAna.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+
+# Load CMS environment
+source ${HOME}/setup_cmsenv.sh
+
+# Add path to the PDF sets
+
+# Where the executable and the library are stored
+EXEC_PATH=${HOME}/soft/jetAnalysis/processing
+cd $EXEC_PATH
+
+input_file_list=$1
+output_file_name=$2
+
+echo -e "Input file list: ${input_file_list}"
+echo -e "Output file name: ${output_file_name}"
+
+# Run jetAna
+../build/jetAna ${input_file_list} ${output_file_name}
+
+echo -e "Data processing of thes ${input_file_list} is finished"

processing/split_input_2_sublists.sh

@@ -0,0 +1,36 @@
+#!/bin/bash
+
+# Check if the correct number of arguments is provided
+if [ $# -ne 2 ]; then
+    echo "Usage: $0 <input_file> <N>"
+    exit 1
+fi
+
+input_file="$1"  # Input file name
+N="$2"           # Number of entries for each sublist
+
+# Check if the input file exists
+if [ ! -f "$input_file" ]; then
+    echo "Input file '$input_file' not found."
+    exit 1
+fi
+
+# Count the total number of lines in the input file
+total_lines=$(wc -l < "$input_file")
+
+# Calculate the number of sublists needed
+num_sublists=$((total_lines / N))
+if [ $((total_lines % N)) -ne 0 ]; then
+    ((num_sublists++))
+fi
+
+# Create sublists
+for ((i = 0; i < num_sublists; i++)); do
+    start=$((i * N + 1))  # Calculate start line number for current sublist
+    end=$((start + N - 1))  # Calculate end line number for current sublist
+    sublist_file="inputfile_$((i+1)).list"  # Name of sublist file
+    sed -n "${start},${end}p" "$input_file" > "$PWD/input/$sublist_file"  # Extract sublist
+done
+
+echo $num_sublists
+

processing/submit_jetAna.sh

@@ -0,0 +1,42 @@
+#!/bin/bash
+
+# Set path to CMSSW
+source $HOME/setup_cmsenv.sh
+
+# Initial parameters to run
+EXEC_PATH=${HOME}/soft/jetAnalysis/processing
+cd $EXEC_PATH
+
+files_per_job=2
+#input_file_list=$HOME/filelists/pythiaHydjet2018_miniAODforest.txt
+input_file_list=$HOME/filelists/test_list.txt
+
+echo -e "Splitting input file list: ${input_file_list}"
+n_sublists=$(./split_input_2_sublists.sh ${input_file_list} ${files_per_job})
+echo -e "Input file list is splitted into ${n_sublists}"
+
+for ((jobId = 1; jobId <= $n_sublists; jobId++)); do
+cat <<EOF >condor/sub/job_jetAna_$jobId.sub
+universe = vanilla
+
+executable = run_jetAna.sh
++JobFlavour           = "longlunch"
+getenv     = True
+requirements =((OpSysAndVer =?= "AlmaLinux9") && (CERNEnvironment =?= "qa"))
+RequestCpus = 1
+transfer_input_files  = voms_proxy.txt
+environment = "X509_USER_PROXY=voms_proxy.txt"
+
+arguments             = input/inputfile_$jobId.list output/jetAna/oJetAna_$jobId.root
+
+output                = condor/log/jetAna.${jobId}.out
+error                 = condor/log/jetAna.${jobId}.err
+log                   = condor/log/jetAna.${jobId}.log
+
+queue 
+
+EOF
+
+    condor_submit condor/sub/job_jetAna_$jobId.sub
+done
+