Fixed NA values for RVIS in collapsing gene summary output

nickzren · Aug 3, 2017 · f6f8aaa · f6f8aaa
1 parent fcabd95
commit f6f8aaa
Showing 1 changed file with 7 additions and 1 deletion.
diff --git a/src/main/java/function/genotype/collapsing/CollapsingGeneSummary.java b/src/main/java/function/genotype/collapsing/CollapsingGeneSummary.java
@@ -92,7 +92,13 @@ private static void calculateRegression(String geneSampleMatrixFilePath,
 
     public String getRvis() {
         if (RvisCommand.isIncludeRvis) {
-            return RvisManager.getLine(name);
+            String geneName = name;
+
+            if (name.contains("_")) { // if using gene domain
+                geneName = name.substring(0, name.indexOf("_"));
+            }
+
+            return RvisManager.getLine(geneName);
         } else {
             return "";
         }