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113 enable liftover option for test vcfs #229

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113 enable liftover option for test vcfs

113 enable liftover option for test vcfs #229

Triggered via pull request December 3, 2024 16:40
@kubranarcikubranarci
synchronize #115
113-enable-liftover-option-for-test-vcfs
Status Failure
Total duration 5m 50s
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ci.yml

on: pull_request
Matrix: test
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32 errors and 12 warnings
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools': Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for indel somatic variants, tested benchmarking methods are sompy.Params: --analysis 'somatic' --variant_type 'indel' --method 'sompy': Test pipeline for indel somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 2 of 2 assertions failed
latest-stable | docker | 1/6
Process completed with exit code 1.
Test pipeline for liftover small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools' --liftover 'truth': Test pipeline for liftover small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 2 of 2 assertions failed
latest-stable | docker | 6/6
Process completed with exit code 1.
latest-stable | docker | 3/6
Process completed with exit code 1.
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.Params: --analysis 'germline' --variant_type 'structural' --method 'truvari,svbenchmark,wittyer': Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for snv somatic variants, tested benchmarking methods are sompy.-stub: Test pipeline for snv somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.-stub: Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for snv somatic variants, tested benchmarking methods are sompy.Params: --analysis 'somatic' --variant_type 'snv' --method 'sompy': Test pipeline for snv somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 1 of 1 assertions failed
24.04.2 | docker | 2/6
Process completed with exit code 1.
latest-stable | docker | 5/6
Process completed with exit code 1.
Test pipeline for liftover structural germline variants, tested benchmarking methods are truvari.Params: --analysis 'germline' --variant_type 'structural' --method 'truvari' --liftover 'test': Test pipeline for liftover structural germline variants, tested benchmarking methods are truvari#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.-stub: Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark.Params: --analysis 'somatic' --variant_type 'structural' --method 'truvari,svbenchmark': Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark#L1
Assertion failed: 2 of 2 assertions failed
24.04.2 | docker | 4/6
Process completed with exit code 1.
24.04.2 | docker | 3/6
Process completed with exit code 1.
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.Params: --analysis 'germline' --variant_type 'structural' --method 'truvari,svbenchmark,wittyer': Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for snv somatic variants, tested benchmarking methods are sompy.-stub: Test pipeline for snv somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools': Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for indel somatic variants, tested benchmarking methods are sompy.Params: --analysis 'somatic' --variant_type 'indel' --method 'sompy': Test pipeline for indel somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 2 of 2 assertions failed
24.04.2 | docker | 1/6
Process completed with exit code 1.
24.04.2 | docker | 6/6
Process completed with exit code 1.
Test pipeline for liftover small germline variants, tested benchmarking methods are happy and rtgtools.Params: --analysis 'germline' --variant_type 'small' --method 'happy,rtgtools' --liftover 'truth': Test pipeline for liftover small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools.-stub: Test pipeline for small germline variants, tested benchmarking methods are happy and rtgtools#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for snv somatic variants, tested benchmarking methods are sompy.Params: --analysis 'somatic' --variant_type 'snv' --method 'sompy': Test pipeline for snv somatic variants, tested benchmarking methods are sompy#L1
Assertion failed: 1 of 1 assertions failed
latest-stable | docker | 2/6
Process completed with exit code 1.
latest-stable | docker | 4/6
Process completed with exit code 1.
Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer.-stub: Test pipeline for structural germline variants, tested benchmarking methods are truvari, svbenchmark and wittyer#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark.Params: --analysis 'somatic' --variant_type 'structural' --method 'truvari,svbenchmark': Test pipeline for structural somatic variants, tested benchmarking methods are truvari and svbenchmark#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline for liftover structural germline variants, tested benchmarking methods are truvari.Params: --analysis 'germline' --variant_type 'structural' --method 'truvari' --liftover 'test': Test pipeline for liftover structural germline variants, tested benchmarking methods are truvari#L1
Assertion failed: 2 of 2 assertions failed
24.04.2 | docker | 5/6
Process completed with exit code 1.
latest-stable | docker | 1/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
latest-stable | docker | 6/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
latest-stable | docker | 3/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
24.04.2 | docker | 2/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
latest-stable | docker | 5/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
24.04.2 | docker | 4/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
24.04.2 | docker | 3/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
24.04.2 | docker | 1/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
24.04.2 | docker | 6/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
latest-stable | docker | 2/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
latest-stable | docker | 4/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
24.04.2 | docker | 5/6
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636