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Retrieving module information of input and output and EDAM ontology from bio.tools #8600

Retrieving module information of input and output and EDAM ontology from bio.tools

Retrieving module information of input and output and EDAM ontology from bio.tools #8600

Triggered via pull request February 4, 2025 14:47
Status Failure
Total duration 4m 30s
Artifacts 16

pytest.yml

on: pull_request
Matrix: setup
Get test file matrix
2s
Get test file matrix
Matrix: test
coverage
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coverage
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44 errors and 60 warnings
Run modules/test_info.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_modules_utils.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_lint.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run components/test_components_snapshot_test.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run components/test_components_utils.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_modules_json.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_if_empty_null.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_remove.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_create.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_list.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_install.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_patch.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_update.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_list.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_create.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/test_download.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_subworkflows.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_cli.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_info.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run pipelines/test_lint.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_install.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run test_modules.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_update.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-latest
Process completed with exit code 1.
Run modules/test_info.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_generate_snapshot.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_snapshot_test.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_local_component_structure.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_if_empty_null.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_list.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_install.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_patch.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_update.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_list.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_components.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_download.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_list.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_subworkflows.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_test_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_cli.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_info.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_pipelines.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_lint_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_modules.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_remove.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_app.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_params_file.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_rocrate.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_sync.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_schema.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_launch.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
coverage_pipelines__test_bump_version.py
5.47 KB
coverage_pipelines__test_create.py
5.41 KB
coverage_pipelines__test_create_app.py
5.43 KB
coverage_pipelines__test_create_logo.py
5.41 KB
coverage_pipelines__test_launch.py
5.57 KB
coverage_pipelines__test_list.py
5.25 KB
coverage_pipelines__test_params_file.py
5.5 KB
coverage_pipelines__test_refgenie.py
5.26 KB
coverage_pipelines__test_rocrate.py
5.47 KB
coverage_pipelines__test_schema.py
5.51 KB
coverage_pipelines__test_sync.py
5.51 KB
coverage_test_components.py
5.26 KB
coverage_test_lint_utils.py
5.22 KB
coverage_test_pipelines.py
5.23 KB
coverage_test_test_utils.py
5.24 KB
coverage_test_utils.py
5.44 KB