Important! Template update for nf-core/tools v3.1.0 #227
8 tests run, 0 passed, 0 skipped, 8 failed.
Annotations
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --aligner dragmap --save_reference | skip QC/recal/md
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/a723a695dfb42d330536bd4c1f6014e3/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --tools merge
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/46991b45cbda2e191e8723e7f9b67982/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Fails with profile test | --tools vep --vep_cache_version 1 --build_only_index
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/746c5c765ac91c50307cdf52aa36f609/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test sentieon
github-actions / JUnit Test Report
Test sentieon.stub
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/19a0e9021a4e9f444d6500b601213d18/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test pipeline when starting from prepare recalibration
github-actions / JUnit Test Report
Test pipeline when starting from prepare recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step prepare_recalibration --tools null
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/8775f65882b5c2d60afd882794090111/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test pipeline when starting from recalibration
github-actions / JUnit Test Report
Test pipeline when starting from recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step recalibrate --skip_tools baserecalibrator --tools strelka
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/17a33052802907d6e5cbf363ae3c50ca/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --tools controlfreec --no_intervals | tumoronly
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/7d37fa14f56e078ada43e06e51c2d1c1/meta/nextflow.log' file for details
Nextflow stderr:
Check failure on line 1 in Test pipeline
github-actions / JUnit Test Report
Test pipeline.Run with profile test | --tools strelka --no_intervals | germline
Assertion failed:
2 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.11.0-edge
ERROR ~ Unknown config attribute `prov.formats.bco.trace_timestamp` -- check config file: /home/runner/work/sarek/sarek/nextflow.config
-- Check '/home/runner/work/sarek/sarek/~/tests/698f044577a2554453dd7469fee12da8/meta/nextflow.log' file for details
Nextflow stderr: