Merge branch 'dev' into sarek_bcftools_norm

.github/nf-test-tags.yml

@@ -0,0 +1,50 @@
+exclude:
+  - tags: "bcftools/annotate"
+  - tags: "bcftools/concat"
+  - tags: "bcftools/mpileup"
+  - tags: "bcftools/sort"
+  - tags: "bwa/index"
+  - tags: "bwa/mem"
+  - tags: "bwamem2/index"
+  - tags: "bwamem2/mem"
+  - tags: "cat/cat"
+  - tags: "cat/fastq"
+  - tags: "cnvkit/antitarget"
+  - tags: "cnvkit/batch"
+  - tags: "cnvkit/reference"
+  - tags: "deepvariant"
+  - tags: "dragmap/align"
+  - tags: "dragmap/hashtable"
+  - tags: "ensemblvep/download"
+  - tags: "ensemblvep/vep"
+  - tags: "fastp"
+  - tags: "fastqc"
+  - tags: "fgbio/fastqtobam"
+  - tags: "freebayes"
+  - tags: "gatk4/applybqsr"
+  - tags: "gatk4/baserecalibrator"
+  - tags: "gatk4/estimatelibrarycomplexity"
+  - tags: "gatk4/genomicsdbimport"
+  - tags: "gatk4/haplotypecaller"
+  - tags: "gatk4/markduplicates"
+  - tags: "gatk4/mergevcfs"
+  - tags: "gatk4/mutect2"
+  - tags: "gatk4spark/applybqsr"
+  - tags: "gatk4spark/markduplicates"
+  - tags: "gawk"
+  - tags: "lofreq/callparallel"
+  - tags: "mosdepth"
+  - tags: "multiqc"
+  - tags: "ngscheckmate/ncm"
+  - tags: "samblaster"
+  - tags: "samtools/convert"
+  - tags: "samtools/mpileup"
+  - tags: "samtools/stats"
+  - tags: "snpeff/snpeff"
+  - tags: "strelka/germline"
+  - tags: "strelka/somatic"
+  - tags: "subworkflows/utils_nfvalidation_plugin"
+  - tags: "tabix/bgziptabix"
+  - tags: "tabix/tabix"
+  - tags: "tiddit/sv"
+  - tags: "untar"