Implemented MSISENSORPRO tumor-only analysis #6669
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❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Set up job
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Run actions/setup-python@f677139bbe7f9c59b41e40162b753c062f5d49a3
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Run actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b
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Set up Nextflow
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Set up Nextflow secrets
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Cache pdiff
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Install pdiff
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Set up miniconda
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Disk space cleanup
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Start summary
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Run tests | pipeline_docker | 2/5
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Print success in summary
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Clean up
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Post Cache pdiff
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Post Set up Nextflow
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Post Run actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b
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Post Check out pipeline code
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Complete job
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