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Migrate strelka pytest to nf-test #87

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Migrate strelka pytest to nf-test

Migrate strelka pytest to nf-test #87

Triggered via pull request October 29, 2024 13:32
@maxulyssemaxulysse
opened #1711
maxulysse:pytest_convert_strelka_controlfreec
Status Failure
Total duration 4m 51s
Artifacts –

pytest.yml

on: pull_request
Check for changes (pytest)
6s
Check for changes (pytest)
Matrix: pytest
confirm-pass
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5 errors and 2 warnings
strelka docker NF 24.04.2
Process returned exit code 5 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:35:47 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:35:48 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:35:49 GMT+0000 (Coordinated Universal Time)
strelka docker NF 24.04.2
Process completed with exit code 1.
strelka docker NF latest-everything
Process returned exit code 5 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 13:37:18 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:37:19 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:37:20 GMT+0000 (Coordinated Universal Time)
strelka docker NF latest-everything
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
strelka docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
strelka docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.