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Fix up ARM profile for updated trim-galore
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pinin4fjords committed Oct 22, 2024
1 parent a1d558e commit dae2899
Showing 1 changed file with 1 addition and 8 deletions.
9 changes: 1 addition & 8 deletions conf/arm.config
Original file line number Diff line number Diff line change
Expand Up @@ -210,15 +210,8 @@ process {
container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/4b/4bcb36d5e1fb90c8af0171a83b792ada446b04feb4ac3f26d0ce550d3c678383/data' : 'community.wave.seqera.io/library/grep_sed_tar:4b2523b1c76a5494' }
}

//// Remove this once we've got a new Biocontainer for trimgalore with the
//// newer cutadapt, and we've update the nf-core module
//// https://github.com/bioconda/bioconda-recipes/pull/51563

withName: TRIMGALORE {
//conda = 'bioconda::cutadapt=4.2 trim-galore=0.6.10'

conda = 'bioconda::cutadapt=4.9 trim-galore=0.6.10'
container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/0d/0dda1e09d10d1e2994ea85843b1e3d62212598ca5047e0ab419d5d87db637057/data' : 'community.wave.seqera.io/library/cutadapt_trim-galore:1cd58fa242e634da' }
container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/10/10e7b91ef06bdf5790120809afc8cf36aac0261b618d810c952d5afd60dd5ed2/data' : 'community.wave.seqera.io/library/cutadapt_trim-galore:2aa2fc797328573b' }

}

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