Merge pull request #1486 from nf-core/bump_star

Bump STAR build for multiprocessing fix
nf-core · Jan 13, 2025 · bdd52ec · bdd52ec
2 parents 0a86dc4 + dcb0110
commit bdd52ec
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Showing 7 changed files with 18 additions and 16 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [PR #1480](https://github.com/nf-core/rnaseq/pull/1480) - Bump version after release 3.18.0
 - [PR #1482](https://github.com/nf-core/rnaseq/pull/1482) - Update trimgalore module for save_unpaired fix
+- [pR #1486](https://github.com/nf-core/rnaseq/pull/1486) - Bump STAR build for multiprocessing fix
 
 # 3.18.0 - 2024-12-19
 

diff --git a/conf/arm.config b/conf/arm.config
@@ -121,11 +121,11 @@ process {
     }
 
     withName: 'STAR_GENOMEGENERATE' {
-        container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/a2/a2d5226e4ce3dee8b29154c16a87d282d96c76e75b6678d032643902591586e2/data' : 'community.wave.seqera.io/library/htslib_samtools_star_gawk:1d1b7da208684cac' }
+        container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/40/40d803371e50330de0773c7cc50315e2c3b4b41dcf123823adeb0a07d71654c1/data' : 'community.wave.seqera.io/library/htslib_samtools_star_gawk:ae438e9a604351a4' }
     }
 
     withName: 'STAR_ALIGN' {
-        container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/a2/a2d5226e4ce3dee8b29154c16a87d282d96c76e75b6678d032643902591586e2/data' : 'community.wave.seqera.io/library/htslib_samtools_star_gawk:1d1b7da208684cac' }
+        container = { workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/40/40d803371e50330de0773c7cc50315e2c3b4b41dcf123823adeb0a07d71654c1/data' : 'community.wave.seqera.io/library/htslib_samtools_star_gawk:ae438e9a604351a4' }
     }
 
     withName: 'TXIMETA_TXIMPORT' {

diff --git a/modules.json b/modules.json
@@ -227,13 +227,13 @@
                     },
                     "star/align": {
                         "branch": "master",
-                        "git_sha": "6a367612c2c27aa659293c656afa764361223db4",
+                        "git_sha": "3c259f0ac1ed9ae3f6b835461d054edffc60120e",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/star/align/star-align.diff"
                     },
                     "star/genomegenerate": {
                         "branch": "master",
-                        "git_sha": "6a367612c2c27aa659293c656afa764361223db4",
+                        "git_sha": "3c259f0ac1ed9ae3f6b835461d054edffc60120e",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/star/genomegenerate/star-genomegenerate.diff"
                     },

diff --git a/modules/nf-core/star/align/main.nf b/modules/nf-core/star/align/main.nf
diff --git a/modules/nf-core/star/align/star-align.diff b/modules/nf-core/star/align/star-align.diff
diff --git a/modules/nf-core/star/genomegenerate/main.nf b/modules/nf-core/star/genomegenerate/main.nf
diff --git a/modules/nf-core/star/genomegenerate/star-genomegenerate.diff b/modules/nf-core/star/genomegenerate/star-genomegenerate.diff