use nft-utils 0.0.2 to get relative path in snapshots

nf-core · Oct 2, 2024 · 1d35e2a · 1d35e2a
1 parent 2b856b7
commit 1d35e2a
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Showing 21 changed files with 8,077 additions and 8,077 deletions.
diff --git a/nf-test.config b/nf-test.config
@@ -13,6 +13,6 @@ config {
     // load the necessary plugins
     plugins {
         load "[email protected]"
-        load "[email protected].1"
+        load "[email protected].2"
     }
 }
diff --git a/tests/default.nf.test b/tests/default.nf.test
@@ -23,8 +23,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }
@@ -54,8 +54,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }

diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap
diff --git a/tests/featurecounts_group_type.nf.test b/tests/featurecounts_group_type.nf.test
@@ -24,8 +24,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }
@@ -56,8 +56,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }

diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap
diff --git a/tests/hisat2.nf.test b/tests/hisat2.nf.test
@@ -24,8 +24,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }
@@ -56,8 +56,8 @@ nextflow_pipeline {
                     workflow.trace.succeeded().size(),
                     // pipeline versions.yml file for multiqc from which Nextflow version is removed because we tests pipelines on multiple Nextflow versions
                     removeNextflowVersion("$outputDir/pipeline_info/nf_core_rnaseq_software_mqc_versions.yml"),
-                    // All stable path name
-                    stable_name*.name,
+                    // All stable path name, with a relative path
+                    getRelativePath(stable_name, outputDir),
                     // All files with stable contents
                     stable_path
                 ).match() }