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Important! Template update for nf-core/tools v3.2.0 #271

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Important! Template update for nf-core/tools v3.2.0

Important! Template update for nf-core/tools v3.2.0 #271

Triggered via pull request January 30, 2025 14:21
@pinin4fjordspinin4fjords
synchronize #1496
Status Success
Total duration 30s
Artifacts –

template_version_comment.yml

on: pull_request_target
template_version
23s
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23 errors
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90 - stub: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 2 of 2 assertions failed
Test Process DESEQ2_QC.parse count data correctly: Test Process DESEQ2_QC#L1
Assertion failed: 2 of 2 assertions failed
Test Process DESEQ2_QC.parse count data correctly - stub: Test Process DESEQ2_QC#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function getSingleReport with a single file: Test Functions#L1
Assertion failed: 2 of 2 assertions failed
Test Functions.Test Function getSingleReport with multiple files: Test Functions#L1
Assertion failed: 4 of 4 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem - stub: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 2 of 2 assertions failed
Test Process FASTQC.sarscov2 single-end [fastq]: Test Process FASTQC#L1
Assertion failed: 5 of 5 assertions failed
Test Process FASTQC.sarscov2 paired-end [fastq]: Test Process FASTQC#L1
Assertion failed: 8 of 8 assertions failed
Test Process FASTQC.sarscov2 interleaved [fastq]: Test Process FASTQC#L1
Assertion failed: 5 of 5 assertions failed
Test Process FASTQC.sarscov2 paired-end [bam]: Test Process FASTQC#L1
Assertion failed: 5 of 5 assertions failed
Test Process FASTQC.sarscov2 multiple [fastq]: Test Process FASTQC#L1
Assertion failed: 14 of 14 assertions failed
Test Process FASTQC.sarscov2 custom_prefix: Test Process FASTQC#L1
Assertion failed: 5 of 5 assertions failed
Test Process FASTQC.sarscov2 single-end [fastq] - stub: Test Process FASTQC#L1
Assertion failed: 2 of 2 assertions failed
Test Process FASTQC.sarscov2 paired-end [fastq] - stub: Test Process FASTQC#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc: Test pipeline by skipping QC options#L1
Assertion failed: 2 of 2 assertions failed
Test Workflow FASTQ_FASTQC_UMITOOLS_FASTP.sarscov2 paired-end [fastq]: Test Workflow FASTQ_FASTQC_UMITOOLS_FASTP#L1
Assertion failed: 8 of 8 assertions failed
Test Workflow FASTQ_FASTQC_UMITOOLS_FASTP.skip_fastqc: Test Workflow FASTQ_FASTQC_UMITOOLS_FASTP#L1
Assertion failed: 8 of 8 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 1 of 2 assertions failed