Skip to content
nf-core template version comment

Important! Template update for nf-core/tools v3.2.0 #261

Sign in to view logs

Important! Template update for nf-core/tools v3.2.0

Important! Template update for nf-core/tools v3.2.0 #261

Triggered via pull request January 29, 2025 15:35
@pinin4fjordspinin4fjords
synchronize #1496
Status Success
Total duration 38s
Artifacts –

template_version_comment.yml

on: pull_request_target
template_version
28s
template_version
Fit to window
Zoom out
Zoom in

Annotations

33 errors
Test pipeline by omitting fasta input.Params: no fasta: Test pipeline by omitting fasta input#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping trimming options.Params: --skip_trimming: Test pipeline by skipping trimming options#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with default settings.Params: default: Test pipeline with default settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false: Test pipeline without a group type for featureCounts#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2: Test pipeline with HISAT2 aligner#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with dummy UMI settings.--umi_dedup_tool 'umitools': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by omitting fasta input.Params: no fasta: Test pipeline by omitting fasta input#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping trimming options.Params: --skip_trimming: Test pipeline by skipping trimming options#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false: Test pipeline without a group type for featureCounts#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with default settings.Params: default: Test pipeline with default settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2: Test pipeline with HISAT2 aligner#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with dummy UMI settings.--umi_dedup_tool 'umitools': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by omitting fasta input.Params: no fasta: Test pipeline by omitting fasta input#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping trimming options.Params: --skip_trimming: Test pipeline by skipping trimming options#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2: Test pipeline with HISAT2 aligner#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with default settings.Params: default: Test pipeline with default settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with dummy UMI settings.Params: --aligner hisat2 --umi_dedup_tool 'umicollapse': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with dummy UMI settings.--umi_dedup_tool 'umitools': Test pipeline with dummy UMI settings#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false: Test pipeline without a group type for featureCounts#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 2 of 2 assertions failed