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Fix prepare_genome subworkflow for sortmerna #3221

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Fix prepare_genome subworkflow for sortmerna

Fix prepare_genome subworkflow for sortmerna #3221

Run time

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Job Run time
Check for changes
24s
Run tests (tests/default.nf.test docker NF-24.04.2)
17m 15s
Run tests (tests/skip_trimming.nf.test docker NF-24.04.2)
15m 26s
Run tests (tests/umi.nf.test docker NF-24.04.2)
20m 45s
Run tests (tests/salmon.nf.test docker NF-24.04.2)
10m 32s
Run tests (tests/featurecounts_group_type.nf.test docker NF-24.04.2)
16m 19s
Run tests (tests/skip_qc.nf.test docker NF-24.04.2)
12m 30s
Run tests (tests/hisat2.nf.test docker NF-24.04.2)
14m 19s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-24.04.2)
18m 17s
Run tests (tests/min_mapped_reads.nf.test docker NF-24.04.2)
15m 59s
Run tests (tests/star_rsem.nf.test docker NF-24.04.2)
15m 6s
Run tests (tests/remove_ribo_rna.nf.test docker NF-24.04.2)
19m 59s
Run tests (tests/kallisto.nf.test docker NF-24.04.2)
11m 29s
Run tests (tests/default.nf.test docker NF-latest-everything)
16m 31s
Run tests (tests/skip_trimming.nf.test docker NF-latest-everything)
15m 35s
Run tests (tests/umi.nf.test docker NF-latest-everything)
18m 46s
Run tests (tests/salmon.nf.test docker NF-latest-everything)
9m 8s
Run tests (tests/featurecounts_group_type.nf.test docker NF-latest-everything)
19m 9s
Run tests (tests/skip_qc.nf.test docker NF-latest-everything)
13m 48s
Run tests (tests/hisat2.nf.test docker NF-latest-everything)
14m 8s
Run tests (subworkflows/local/prepare_genome/tests/main.nf.test docker NF-latest-everything)
19m 21s
Run tests (tests/min_mapped_reads.nf.test docker NF-latest-everything)
13m 51s
Run tests (tests/star_rsem.nf.test docker NF-latest-everything)
14m 27s
Run tests (tests/remove_ribo_rna.nf.test docker NF-latest-everything)
19m 52s
Run tests (tests/kallisto.nf.test docker NF-latest-everything)
10m 33s
confirm-pass
1s
6h 13m 30s