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Add FASTQ linting during preprocessing #142

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Add FASTQ linting during preprocessing

Add FASTQ linting during preprocessing #142

Triggered via pull request December 3, 2024 18:41
@pinin4fjordspinin4fjords
synchronize #1461
Status Success
Total duration 38s
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template_version_comment.yml

on: pull_request_target
template_version
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4 errors and 1 warning
Test Subworkflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS.homo_sapiens paired-end [fastq] fastp: Test Subworkflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS#L1
Assertion failed: 1 of 7 assertions failed
Test Subworkflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS.homo_sapiens paired-end [fastq] trimgalore: Test Subworkflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS#L1
Assertion failed: 1 of 7 assertions failed
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment: Test pipeline with Salmon, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment - stub: Test pipeline with Salmon, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
template_version
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636