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Add profile for ARM compatibility #77

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Add profile for ARM compatibility

Add profile for ARM compatibility #77

Triggered via pull request October 23, 2024 10:11
@pinin4fjordspinin4fjords
synchronize #1425
Status Success
Total duration 35s
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template_version_comment.yml

on: pull_request_target
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36 errors
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment: Test pipeline with Salmon, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment - stub: Test pipeline with Salmon, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment: Test pipeline with Salmon, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Salmon, skipping both QC and alignment.Params: --pseudo_aligner salmon --skip_qc --skip_alignment - stub: Test pipeline with Salmon, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Kallisto, skipping both QC and alignment.Params: --pseudo_aligner kallisto --skip_qc --skip_alignment: Test pipeline with Kallisto, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Kallisto, skipping both QC and alignment.Params: --pseudo_aligner kallisto --skip_qc --skip_alignment - stub: Test pipeline with Kallisto, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc - stub: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2: Test pipeline with HISAT2 aligner#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2 - stub: Test pipeline with HISAT2 aligner#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2: Test pipeline with HISAT2 aligner#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with HISAT2 aligner.Params: --aligner hisat2 - stub: Test pipeline with HISAT2 aligner#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Kallisto, skipping both QC and alignment.Params: --pseudo_aligner kallisto --skip_qc --skip_alignment: Test pipeline with Kallisto, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with Kallisto, skipping both QC and alignment.Params: --pseudo_aligner kallisto --skip_qc --skip_alignment - stub: Test pipeline with Kallisto, skipping both QC and alignment#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90 - stub: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem - stub: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with STAR aligner and RSEM for quantification.Params: --aligner star_rsem - stub: Test pipeline with STAR aligner and RSEM for quantification#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline by skipping QC options.Params: --skip_qc - stub: Test pipeline by skipping QC options#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with default settings.Params: default: Test pipeline with default settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with default settings.Params: default - stub: Test pipeline with default settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false: Test pipeline without a group type for featureCounts#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false - stub: Test pipeline without a group type for featureCounts#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false: Test pipeline without a group type for featureCounts#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline without a group type for featureCounts.Params: --featurecounts_group_type false - stub: Test pipeline without a group type for featureCounts#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with a minimum mapped read threshold of 90.Params: --min_mapped_reads 90 - stub: Test pipeline with a minimum mapped read threshold of 90#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with default settings.Params: default: Test pipeline with default settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with default settings.Params: default - stub: Test pipeline with default settings#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna - stub: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline with ribosomal RNA removal.Params: --remove_ribo_rna - stub: Test pipeline with ribosomal RNA removal#L1
Assertion failed: 1 of 2 assertions failed