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first release candidate 2
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zachary-foster committed Jan 28, 2025
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[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23pathogensurveillance-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/pathogensurveillance)[![Follow on Twitter](http://img.shields.io/badge/twitter-%40nf__core-1DA1F2?labelColor=000000&logo=twitter)](https://twitter.com/nf_core)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)

## NOTE: THIS PROJECT IS UNDER DEVELOPMENT AND MAY NOT FUNCTION AS EXPECTED UNTIL THIS MESSAGE GOES AWAY

## Introduction

**nf-core/pathogensurveillance** is a population genomic pipeline for pathogen diagnosis, variant detection, and biosurveillance.
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