Merge pull request #42 from nf-core/fix-conditional-bwamem2-index-cre…

…ation Fix conditional creation of bwa-mem2 index
nf-core · May 21, 2024 · a5b9846 · a5b9846
2 parents d5d64c4 + 437e72e
commit a5b9846
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/subworkflows/local/prepare_reference/main.nf b/subworkflows/local/prepare_reference/main.nf
@@ -56,7 +56,7 @@ workflow PREPARE_REFERENCE {
     // Set bwa-mem2 index, unpack or create if required
     //
     ch_genome_bwamem2_index = Channel.empty()
-    if (run_config.has_dna && run_config.stages.alignment) {
+    if (run_config.has_dna_fastq && run_config.stages.alignment) {
         if (!params.ref_data_genome_bwamem2_index) {
 
             BWAMEM2_INDEX(