Merge pull request #46 from nf-core/bump-sambamba-version

Bump Sambamba to 1.0.1
nf-core · May 29, 2024 · 31be68d · 31be68d
2 parents 2f33d9e + ab9518b
commit 31be68d
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diff --git a/modules/local/sambamba/merge/environment.yml b/modules/local/sambamba/merge/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::sambamba=1.0
+  - bioconda::sambamba=1.0.1
diff --git a/modules/local/sambamba/merge/main.nf b/modules/local/sambamba/merge/main.nf
@@ -3,8 +3,8 @@ process SAMBAMBA_MERGE {
     label 'process_medium'
 
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/sambamba:1.0--h98b6b92_0' :
-        'biocontainers/sambamba:1.0--h98b6b92_0' }"
+        'https://depot.galaxyproject.org/singularity/sambamba:1.0.1--h6f6fda4_0' :
+        'biocontainers/sambamba:1.0.1--h6f6fda4_0' }"
 
     input:
     tuple val(meta), path(bams)