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Add tiff library dependency #1

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merged 2 commits into from
Oct 30, 2024
Merged

Add tiff library dependency #1

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a1e86fa
Fix package name
tom-seqera Oct 29, 2024
726b50c
Add tiff library
tom-seqera Oct 29, 2024
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5 changes: 4 additions & 1 deletion .gitignore
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Original file line number Diff line number Diff line change
@@ -1,6 +1,9 @@
# Compiled class file
*.class

# intellij files
.idea/

# Log file
*.log

Expand All @@ -26,4 +29,4 @@ hs_err_pid*
/.project
/.settings/
/.nextflow/
/.nf-test/
/.nf-test/
45 changes: 45 additions & 0 deletions dependency-reduced-pom.xml
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@@ -0,0 +1,45 @@
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>com.nf-core</groupId>
<artifactId>nft-tiff</artifactId>
<name>nft-tiff</name>
<version>0.1.0</version>
<description>An nf-test plugin to test nft-tiff files</description>
<url>https://github.com/nf-core/nft-tiff</url>
<licenses>
<license>
<name>MIT License</name>
<url>http://www.opensource.org/licenses/mit</url>
</license>
</licenses>
<scm>
<connection>scm:git:https://github.com/nf-core/nft-tiff</connection>
<developerConnection>scm:git:ssh://github.com:nf-core/nft-tiff.git</developerConnection>
<url>https://github.com/nf-core/nft-tiff/tree/master</url>
</scm>
<build>
<plugins>
<plugin>
<artifactId>maven-shade-plugin</artifactId>
<version>3.5.2</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>shade</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
<properties>
<maven.compiler.release>${java.version}</maven.compiler.release>
<java.version>11</java.version>
<maven.compiler.source>${java.version}</maven.compiler.source>
<maven.compiler.target>${java.version}</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<additionalparam>-Xdoclint:none</additionalparam>
</properties>
</project>
76 changes: 42 additions & 34 deletions pom.xml
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@@ -1,38 +1,46 @@
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>

<groupId>com.nf-core</groupId>
<artifactId>nft-tiff</artifactId>
<version>0.1.0</version>
<packaging>jar</packaging>

<name>nft-tiff</name>
<description>An nf-test plugin to test nft-tiff files</description>
<url>https://github.com/nf-core/nft-tiff</url>

<licenses>
<license>
<name>MIT License</name>
<url>http://www.opensource.org/licenses/mit</url>
</license>
</licenses>

<scm>
<url>https://github.com/nf-core/nft-tiff/tree/master</url>
<connection>scm:git:https://github.com/nf-core/nft-tiff</connection>
<developerConnection>scm:git:ssh://github.com:nf-core/nft-tiff.git</developerConnection>
</scm>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<java.version>11</java.version>
<maven.compiler.release>${java.version}</maven.compiler.release>
<maven.compiler.source>${java.version}</maven.compiler.source>
<maven.compiler.target>${java.version}</maven.compiler.target>
<additionalparam>-Xdoclint:none</additionalparam>
</properties>
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>

<groupId>com.nf-core</groupId>
<artifactId>nft-tiff</artifactId>
<version>0.1.0</version>
<packaging>jar</packaging>

<name>nft-tiff</name>
<description>An nf-test plugin to test nft-tiff files</description>
<url>https://github.com/nf-core/nft-tiff</url>

<licenses>
<license>
<name>MIT License</name>
<url>http://www.opensource.org/licenses/mit</url>
</license>
</licenses>

<scm>
<url>https://github.com/nf-core/nft-tiff/tree/master</url>
<connection>scm:git:https://github.com/nf-core/nft-tiff</connection>
<developerConnection>scm:git:ssh://github.com:nf-core/nft-tiff.git</developerConnection>
</scm>

<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<java.version>11</java.version>
<maven.compiler.release>${java.version}</maven.compiler.release>
<maven.compiler.source>${java.version}</maven.compiler.source>
<maven.compiler.target>${java.version}</maven.compiler.target>
<additionalparam>-Xdoclint:none</additionalparam>
</properties>

<dependencies>
<dependency>
<groupId>mil.nga</groupId>
<artifactId>tiff</artifactId>
<version>3.0.0</version>
</dependency>
</dependencies>

<build>
<plugins>
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6 changes: 4 additions & 2 deletions ...in/java/nf-core/nf/test/tiff/Methods.java → ...in/java/nf_core/nf/test/tiff/Methods.java
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@@ -1,15 +1,17 @@
package nf-core.nf.test.tiff;
package nf_core.nf.test.tiff;

import mil.nga.tiff.TIFFImage;

/*
* Add your custom methods to nf-test
*
* @author: nf-core
*/

public class Methods {

public static void hello() {
System.out.println("Hello from nft-tiff");
TIFFImage img = new TIFFImage();
}

}
2 changes: 1 addition & 1 deletion ...a/nf-core/nf/test/tiff/PathExtension.java → ...a/nf_core/nf/test/tiff/PathExtension.java
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@@ -1,4 +1,4 @@
package nf-core.nf.test.tiff;
package nf_core.nf.test.tiff;

/*
* Add your custom extensions to the path() method
Expand Down
4 changes: 2 additions & 2 deletions src/main/resources/META-INF/nf-test-plugin
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@@ -1,5 +1,5 @@
moduleName=nft-tiff
moduleVersion=0.1.0
moduleAuthors=nf-core
extensionMethods=nf-core.nf.test.tiff.Methods
extensionClasses=nf-core.nf.test.tiff.PathExtension
extensionMethods=nf_core.nf.test.tiff.Methods
extensionClasses=nf_core.nf.test.tiff.PathExtension