refactor: Use fromSamplesheet from nf-validation

nf-core · Apr 9, 2024 · 6d0473e · 6d0473e
1 parent d0ac344
commit 6d0473e
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Showing 7 changed files with 108 additions and 491 deletions.
diff --git a/assets/schema_input.json b/assets/schema_input.json
@@ -28,6 +28,6 @@
                 "errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
             }
         },
-        "required": ["sample", "fastq_1"]
+        "required": ["sample", "fastq_1", "fastq_2"]
     }
 }
diff --git a/bin/check_samplesheet.py b/bin/check_samplesheet.py
diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf
diff --git a/subworkflows/local/input_check.nf b/subworkflows/local/input_check.nf