Merge pull request #51 from nf-core/dev #52
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| name: nf-core CI | |
| # This workflow is triggered on pushes and PRs to the repository. | |
| # It runs the pipeline with the minimal test dataset to check that it completes without any syntax errors | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| env: | |
| NXF_VER: ${{ matrix.nxf_ver }} | |
| NXF_ANSI_LOG: false | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| # Nextflow versions: check pipeline minimum and current latest | |
| nxf_ver: ['19.10.0', ''] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install Nextflow | |
| run: | | |
| wget -qO- get.nextflow.io | bash | |
| sudo mv nextflow /usr/local/bin/ | |
| - name: Pull docker image | |
| run: | | |
| docker pull nfcore/coproid:dev | |
| docker tag nfcore/coproid:dev nfcore/coproid:1.1.1 | |
| - name: Run pipeline with test data | |
| run: | | |
| nextflow run ${GITHUB_WORKSPACE} -profile test,docker |