[CI] Remove coveralls (#395)

.github/workflows/test.yml

@@ -15,41 +15,31 @@ jobs:
     - uses: actions/checkout@v4
       with:
         submodules: recursive
+
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
+
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
         pip install -r dev_requirements.txt
         pip install --no-deps .
+
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
         flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+
     - name: Test with pytest
       run: |
         coverage run -m pytest
         coverage lcov -o ./coverage/lcov.info
+
     - name: Upload coverage reports to Codecov
       uses: codecov/codecov-action@v5
       env:
         CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
-    - name: Coveralls Parallel
-      uses: coverallsapp/[email protected]
-      with:
-        github-token: ${{ secrets.GITHUB_TOKEN }}
-        flag-name: run-${{ matrix.python-version }}
-        parallel: true
-  finish:
-    needs: test
-    runs-on: ubuntu-latest
-    steps:
-    - name: Coveralls Finished
-      uses: coverallsapp/[email protected]
-      with:
-        github-token: ${{ secrets.github_token }}
-        parallel-finished: true

README.md

@@ -1,10 +1,11 @@
 <div align="center">
 
 # `bagel-cli`
-[![Coverage Status](https://coveralls.io/repos/github/neurobagel/bagel-cli/badge.svg?branch=main)](https://coveralls.io/github/neurobagel/bagel-cli?branch=main)
+[![codecov](https://codecov.io/gh/neurobagel/bagel-cli/graph/badge.svg?token=R1KI9KIP8D)](https://codecov.io/gh/neurobagel/bagel-cli)
 [![Tests](https://github.com/neurobagel/bagel-cli/actions/workflows/test.yml/badge.svg)](https://github.com/neurobagel/bagel-cli/actions/workflows/test.yml)
 [![Docker Image Version](https://img.shields.io/docker/v/neurobagel/bagelcli?label=docker)](https://hub.docker.com/r/neurobagel/bagelcli/tags)
 [![Python versions](https://img.shields.io/badge/Python-3.10%20%7C%203.11-blue?style=flat)](https://www.python.org)
+[![License](https://img.shields.io/github/license/neurobagel/bagel-cli?color=CD5C5C&style=flat)](LICENSE)
 
 </div>