This repository contains presentations and accompanying code for topics explored in the "Bioinformatics" course at the Faculty of Natural Sciences and Mathematics, University of Banja Luka.
This presentation and code explore genome assembly algorithms, as discussed in the Bioinformatics Algorithms book by Phillip Compeau and Pavel Pevzner.
Topics covered:
- Genome assembly challenges
- Overlap-Layout-Consensus approach
- De Bruijn graphs for assembly
- Practical examples and implementations
Presentation (in Serbian): presentation/asembliranje_genoma.pdf
Code: code/genome_assembly.ipynb
🔬 Analysis of IDPpred - new sequence-based predictor for identification of intrinsically disordered protein
This presentation analyzes the IDPpred paper, evaluating its methodology, results, and implications for intrinsically disordered protein (IDP) prediction.
Paper: Chaurasiya, D.; Mondal, R.; Lahiri, T.; Tripathi, A.; Ghinmine, T. IDPpred: A new sequence-based predictor for identification of intrinsically disordered protein with enhanced accuracy. J. Biomol. Struct. Dyn. 2023, 1–9. CrossRef PubMed
Topics covered:
- Introduction to intrinsically disordered proteins
- Importance of IDP prediction
- IDPpred methodology and key findings
- Critical assessment of the paper's strengths and weaknesses
- Future directions for IDP prediction research
Presentation (in Serbian): presentation/idppred_analiza.pdf
Code: code/idppred.ipynb
Disclaimer: This repository is for educational purposes.
Presentation template credit: The presentation was created using a modified version of the MATF presentation template by Nikola Ajzenhamer
Feel free to explore and learn! 🚀