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update config for new wikipathway url format
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johnbraisted committed Mar 8, 2024
1 parent bf26a66 commit 6a94d41
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion config/external_resource_config.txt
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ hmdb_gene http https://hmdb.ca/system/downloads/current/hmdb_proteins.zip hmdb_p
hmdb_met_sdf http https://hmdb.ca/system/downloads/current/structures.zip structures.zip structures.sdf ../misc/data/chemprops/hmdb/ zip chem_props_sdf
reactome_met http http://www.reactome.org/download/current/ChEBI2Reactome_All_Levels.txt ChEBI2Reactome_All_Levels.txt ChEBI2Reactome_All_Levels.txt ../misc/data/reactome/ none pathways_mets
reactome_gene http http://www.reactome.org/download/current/UniProt2Reactome_All_Levels.txt UniProt2Reactome_All_Levels.txt UniProt2Reactome_All_Levels.txt ../misc/data/reactome/ none pathways_genes
wiki_pathways_mets_genes http https://wikipathways-data.wmcloud.org/current/rdf/wikipathways-20240210-rdf-wp.zip wikipathways-20240210-rdf-wp.zip ./wp/ ../misc/data/wikipathwaysRDF/ zip pathways_mets_genes
wiki_pathways_mets_genes http https://data.wikipathways.org/20240210/rdf/wikipathways-20240210-rdf-authors.zip wikipathways-20240210-rdf-authors.zip ./authors/ ../misc/data/wikipathwaysRDF/ zip pathways_mets_genes
chebi_met_sdf ftp https://ftp.ebi.ac.uk/pub/databases/chebi/SDF/ChEBI_complete_3star.sdf.gz ChEBI_complete_3star.sdf.gz ChEBI_complete_3star.sdf ../misc/data/chemprops/chebi/ gzip chem_props_sdf
lipidmaps_met http https://www.lipidmaps.org/files/?file=LMSD&ext=sdf.zip LMSD.sdf.zip structures.sdf ../misc/data/chemprops/lipidmaps/ zip chem_props_sdf
swissprot_human http https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.dat.gz uniprot_sprot_human.dat.gz uniprot_sprot_human.dat ../misc/data/uniprot_human/ gzip proteins
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