Removed defaults from config files #182
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willbradshaw
requested changes
Feb 7, 2025
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| // Files | ||
| viral_tsv = "${projectDir}/test-data/gold-standard-results/virus_hits_filtered.tsv.gz" | ||
| viral_fastq = "" | ||
| viral_tsv = <PATH TO 'virus_hits_db.tsv.gz` FROM OUTPUT OF RUN WORKFLOW> |
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@harmonbhasin we should clarify that one or other of these should be blank (see logic in pipeline for which is the default)
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| // Files | ||
| sample_sheet = "${launchDir}/samplesheet.csv" // Path to library TSV | ||
| sample_sheet = <PATH TO YOUR SAMPLING SHEET> // Path to library TSV |
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I think this one can stay as-is
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Encourages users to read the manuals and understand how the pipeline operates.