Adding ONT functionality to RAW and CLEAN#133

Merged

willbradshaw merged 30 commits intodevfrom simon-ont-raw-clean

Jan 22, 2025

+148-23

Commits on Dec 14, 2024

Merge branch 'single-read-raw-clean' into ont-raw-clean
simonleandergrimm
committed

Commits on Dec 16, 2024

Update main.nf
simonleandergrimm
authored

Commits on Dec 18, 2024

Merge branch 'simon-ont-raw-clean' of https://github.com/naobservatory/mgs-workflow into simon-ont-raw-clean
simonleandergrimm
committed
Merge branch 'single-read-raw-clean' into simon-ont-raw-clean
simonleandergrimm
committed
edited FASTP logic to take into account fastp_single and fastp_paired
simonleandergrimm
committed
Renamed summarize_multiqc processes/folders/scripts to not have pair in the name.
simonleandergrimm
committed
Adopting testing set up from profile ont branch
simonleandergrimm
committed
Fixed summarize multiqc typo and uneeded single-end variable for fastp
simonleandergrimm
committed
dropped unneeded brackets.
simonleandergrimm
committed

Commits on Dec 20, 2024

Commits on Jan 6, 2025

Merge branch 'dev' into simon-ont-raw-clean
simonleandergrimm
authored

Commits on Jan 7, 2025

Commits on Jan 15, 2025

Commits on Jan 16, 2025

Commits on Jan 20, 2025

fixed address of ont ww test data.
simonleandergrimm
committed

Commits on Jan 21, 2025