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willbradshaw committed Jan 31, 2025
2 parents 1fe61dd + 9490aab commit db459fe
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5 changes: 4 additions & 1 deletion CHANGELOG.md
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# v2.8.0.0
# v2.8.0.0 (in development)
- Major changes to many parts of the pipeline as part of a general performance overhaul
- Modified most processes in the RUN and RUN_VALIDATION workflows to stream data in and out rather than reading whole files
- As part of the previous change, modified most processes in the RUN and RUN_VALIDATION workflows to work with interleaved rather than paired sequence data
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- Viral hits TSV moved from `virus_hits_db.tsv.gz` to `virus_hits_filtered.tsv.gz`
- Numerous changes to column names in viral hits TSV, mainly to improve clarity

# v2.7.0.2
- Updated `pipeline-version.txt`

# v2.7.0.1
- Fixed index-related issues from v2.7.0.0:
- Updated `EXTRACT_VIRAL_READS` to expect updated path to viral genome DB
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2 changes: 1 addition & 1 deletion pipeline-version.txt
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2.5.2
2.7.0.2

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